Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30095
(848 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 163 4e-39
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 149 1e-34
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 145 1e-33
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 130 4e-29
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 125 2e-27
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 116 1e-24
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 77 7e-13
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 76 1e-12
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 72 2e-11
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 65 2e-09
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 64 6e-09
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 63 7e-09
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 62 1e-08
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 58 2e-07
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 57 6e-07
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 56 9e-07
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 55 2e-06
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 54 3e-06
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 54 6e-06
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 53 8e-06
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 53 1e-05
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 50 6e-05
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 45 0.003
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 44 0.004
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.079
UniRef50_A0R673 Cluster: Putative uncharacterized protein; n=1; ... 37 0.56
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 35 2.2
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 35 2.2
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_UPI00015B40FA Cluster: PREDICTED: similar to CG2767-PA;... 33 6.9
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 33 9.1
UniRef50_Q4WTI4 Cluster: C6 finger domain protein, putative; n=5... 33 9.1
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 163 bits (397), Expect = 4e-39
Identities = 71/87 (81%), Positives = 80/87 (91%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPGSK+NKKE+VEA
Sbjct: 16 FLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEA 75
Query: 182 VTIIETPPMVCVGVVGYIETPHGLPLF 262
VTI+ETPPMV VG+VGY+ETP GL F
Sbjct: 76 VTIVETPPMVVVGIVGYVETPRGLRTF 102
Score = 158 bits (384), Expect = 1e-37
Identities = 84/165 (50%), Positives = 104/165 (63%)
Frame = +1
Query: 265 TVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVI 444
TV+AEH+S++C+RRFYKNW+ WQDE G+K +EKDF M +YC V+RVI
Sbjct: 104 TVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVI 163
Query: 445 AHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDEMIDCIGVT 624
AHTQM+LL RQKKAH+MEIQ+ K + + VF QDEMID IGVT
Sbjct: 164 AHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVT 223
Query: 625 KGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
KG+ + HTKKL P + R RKVACIGAWHP RV+F+
Sbjct: 224 KGKGYKGVTSR-WHTKKL-PRKTHRGLRKVACIGAWHP-ARVAFS 265
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 149 bits (360), Expect = 1e-34
Identities = 62/83 (74%), Positives = 75/83 (90%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGSK+NKKE+VEA
Sbjct: 16 FTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEA 75
Query: 182 VTIIETPPMVCVGVVGYIETPHG 250
VTI+ETPPMV GV GY++TP G
Sbjct: 76 VTIVETPPMVIAGVTGYVDTPQG 98
Score = 88.2 bits (209), Expect = 2e-16
Identities = 39/73 (53%), Positives = 46/73 (63%)
Frame = +1
Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
P AL T+WAEH+SE+ RRRFY NW WQDE G+K IE DF K+ +
Sbjct: 96 PQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKK 155
Query: 421 YCSVVRVIAHTQM 459
YCS +RVIAHTQM
Sbjct: 156 YCSSIRVIAHTQM 168
Score = 52.0 bits (119), Expect = 2e-05
Identities = 31/59 (52%), Positives = 36/59 (61%)
Frame = +1
Query: 583 VFAQDEMIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
V A +MID IGVT+G + HTKKL H + RKVACIGAWHP RV+FT
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSR-WHTKKLPRKTH-KGLRKVACIGAWHP-SRVAFT 217
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 145 bits (351), Expect = 1e-33
Identities = 77/166 (46%), Positives = 99/166 (59%)
Frame = +1
Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
P + T++AEH+S++CRRRFYK+W+ W+D G+K ++KDF M +
Sbjct: 96 PRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKK 155
Query: 421 YCSVVRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDE 600
YC V+RVI HTQMKLL RQKKAHIMEIQL K + SVF+Q E
Sbjct: 156 YCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSE 215
Query: 601 MIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHP 738
+ID I VTKG+ ++ HTKKL P + + RKVACIGAWHP
Sbjct: 216 VIDVIAVTKGRGVKGVTSR-WHTKKL-PRKTHKGLRKVACIGAWHP 259
Score = 141 bits (341), Expect = 2e-32
Identities = 63/87 (72%), Positives = 73/87 (83%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG KI+K+E VEA
Sbjct: 16 FLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEA 75
Query: 182 VTIIETPPMVCVGVVGYIETPHGLPLF 262
VTI+ETPP+V VGVVGY+ TP GL F
Sbjct: 76 VTIVETPPLVVVGVVGYVATPRGLRSF 102
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 130 bits (314), Expect = 4e-29
Identities = 56/83 (67%), Positives = 71/83 (85%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGSK+NKKE+VE
Sbjct: 67 FLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGSKVNKKEVVEP 126
Query: 182 VTIIETPPMVCVGVVGYIETPHG 250
VTI+E PPMV VG+VGY +TP G
Sbjct: 127 VTILEAPPMVVVGIVGYRQTPVG 149
Score = 93.9 bits (223), Expect = 5e-18
Identities = 62/172 (36%), Positives = 82/172 (47%), Gaps = 7/172 (4%)
Frame = +1
Query: 265 TVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVI 444
TVWA H S + RRRFYKNW + GR + + K + ++RV+
Sbjct: 155 TVWAHHTSVEFRRRFYKNWKQSAQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVV 214
Query: 445 AHTQMKLLKQRQ---KKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDEMIDCI 615
AHTQ++ L+ + KKAH+ EIQ+ K +++ DSVF Q E D
Sbjct: 215 AHTQLRKLRNNRVGVKKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVC 274
Query: 616 GVTKGQRIQRCHFLVGHTKK----LTPVRHTRVFRKVACIGAWHPFLRVSFT 759
VTKG H G K+ P + R RKVACIGAWHP RV +T
Sbjct: 275 AVTKG------HGFTGVVKRWGVACLPRKTHRGLRKVACIGAWHP-SRVMYT 319
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 125 bits (301), Expect = 2e-27
Identities = 56/87 (64%), Positives = 68/87 (78%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP SK+NKKE+VE
Sbjct: 16 FSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPESKMNKKEVVEG 75
Query: 182 VTIIETPPMVCVGVVGYIETPHGLPLF 262
V I+ETPPMV +G+VGYIE P GL F
Sbjct: 76 VAIVETPPMVVMGIVGYIEIPRGLWTF 102
Score = 82.2 bits (194), Expect = 1e-14
Identities = 59/171 (34%), Positives = 86/171 (50%)
Frame = +1
Query: 247 WTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYC 426
WT V+AEH+S ++ FYKNW+ ++G++ +E +FK M +YC
Sbjct: 100 WT--FKAVFAEHISGKSKKCFYKNWHSEKKASTKYF------DMGKRQLEMEFKSMKKYC 151
Query: 427 SVVRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDEMI 606
V+ ++AHTQM LL QKKAH+MEIQ+ + WR QDE+I
Sbjct: 152 QVICIVAHTQMCLLSLHQKKAHLMEIQVMGHCGLS--------WR------EAVNQDEII 197
Query: 607 DCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
D I TKG + + ++ P R K+ C+GAWHP RV+F+
Sbjct: 198 DVIKETKGNGYKGVTRV--DIQRNCPERPIEGCPKL-CVGAWHP-ARVTFS 244
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 116 bits (278), Expect = 1e-24
Identities = 58/111 (52%), Positives = 75/111 (67%)
Frame = +2
Query: 14 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 193
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 194 ETPPMVCVGVVGYIETPHGLPLF*LSGRSICLKTVDVASTKTGTNARRRLS 346
ET P + VG VG ET GL F +S+ K + +TG + S
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTF----KSVFAKHISNECKRTGIKYKTNTS 107
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 76.6 bits (180), Expect = 7e-13
Identities = 38/83 (45%), Positives = 53/83 (63%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS E+ +A
Sbjct: 14 FGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSAGAEVRKA 72
Query: 182 VTIIETPPMVCVGVVGYIETPHG 250
VT++E PPM + V GY TP+G
Sbjct: 73 VTVVEVPPMRVLAVRGYKMTPYG 95
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 75.8 bits (178), Expect = 1e-12
Identities = 41/82 (50%), Positives = 51/82 (62%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG + KEI
Sbjct: 16 FSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTSGKEIFVP 74
Query: 182 VTIIETPPMVCVGVVGYIETPH 247
VTI+ETPPM V Y P+
Sbjct: 75 VTIVETPPMFVAAVRLYGYDPN 96
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 71.7 bits (168), Expect = 2e-11
Identities = 34/84 (40%), Positives = 54/84 (64%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S +EI +A
Sbjct: 14 FSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSAGQEIRKA 72
Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
VT++E PPM + V GY TP+G+
Sbjct: 73 VTVVEVPPMKVLAVRGYHMTPYGM 96
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 64.9 bits (151), Expect = 2e-09
Identities = 34/83 (40%), Positives = 45/83 (54%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+KR+ + ++P DD V L F GYKAGMTHVV D+ + E
Sbjct: 14 FSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVP 71
Query: 182 VTIIETPPMVCVGVVGYIETPHG 250
VT++ETPPM V Y +TP+G
Sbjct: 72 VTVVETPPMRAAAVRLYEDTPYG 94
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 63.7 bits (148), Expect = 6e-09
Identities = 33/77 (42%), Positives = 47/77 (61%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N KEI
Sbjct: 14 FSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTNGKEIFMP 69
Query: 182 VTIIETPPMVCVGVVGY 232
VTIIETPP+ G+ Y
Sbjct: 70 VTIIETPPLRVFGIRAY 86
Score = 39.5 bits (88), Expect = 0.10
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = +1
Query: 433 VRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*NG-PENIWRNLSLFDSVFAQDEMID 609
VR I TQ ++K + KK +ME + K N E + + L + + V + E++D
Sbjct: 163 VRAIVATQPWVIKLK-KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGE-VLKEGELLD 220
Query: 610 CIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
I VTKG+ Q G KL + ++ RKV IG WHP RV +T
Sbjct: 221 VIAVTKGKGTQGPVKRWGI--KLRAHKDSKGRRKVGSIGPWHP-ARVMWT 267
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 63.3 bits (147), Expect = 7e-09
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S +EI
Sbjct: 19 FSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTEGEEISVP 75
Query: 182 VTIIETPPMVCVGVVGYIETPHG 250
VTI++ PPM + Y TP G
Sbjct: 76 VTILDAPPMYVAAIRAYAPTPDG 98
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 62.5 bits (145), Expect = 1e-08
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +2
Query: 8 PKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVT 187
P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR +EI VT
Sbjct: 18 PRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTAGQEIFVPVT 74
Query: 188 IIETPPMVCVG--VVGY 232
+IETPPMV +G V GY
Sbjct: 75 VIETPPMVVLGARVYGY 91
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 58.4 bits (135), Expect = 2e-07
Identities = 31/83 (37%), Positives = 43/83 (51%)
Frame = +2
Query: 8 PKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVT 187
P+KRS + +P+ + P L F+GYK GMTHV D P S N KEI VT
Sbjct: 18 PRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTNGKEIYMPVT 76
Query: 188 IIETPPMVCVGVVGYIETPHGLP 256
++E PP++ + + Y G P
Sbjct: 77 VLEVPPIIPLALRAYAIDGKGEP 99
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 56.8 bits (131), Expect = 6e-07
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 175
+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S EI
Sbjct: 14 YSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSATEGMEIS 69
Query: 176 EAVTIIETPPMVCVGVVGYIETPHG 250
VTI+E P M G+ Y ++P+G
Sbjct: 70 VPVTIVEAPQMHVAGIRVYDDSPYG 94
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 56.4 bits (130), Expect = 9e-07
Identities = 46/157 (29%), Positives = 66/157 (42%)
Frame = -3
Query: 735 MPSSNAGNFPKDPCVSYGGKLLCVPNEKVTPLYPLPLGDTNAVNHFILGKHRIEQG*VSP 556
MPS+N N + V + L P+ T L + GD+N +NHFIL ++R+ +
Sbjct: 19 MPSTNTSNLSQTS-VGLSWQFLGTPSVGDT-LETVTFGDSNDINHFILFENRVNRNFFFK 76
Query: 555 DVLWPISLCPRWYHR*LDFHNVXXXXXXXXXXXXSVGNDSYNTTVADHLLEIFFY*FASK 376
P++ LDF V V DS N +V + F F
Sbjct: 77 VFFGPVNFVGDGTTVDLDFSQVSFLLRQWSLLDLGVSQDSDNRSVLLDSGQFSFNLFGVS 136
Query: 375 LILPFLTGFSESLLLAFVPVFVEATSTVFRHMLRPDS 265
+ F F E LL F+PV VE++S F + PDS
Sbjct: 137 GV--FTRVFGEGFLLGFIPVLVESSSDFFTQVFSPDS 171
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 55.2 bits (127), Expect = 2e-06
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 44 KAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGV 223
+A K KPV L ++ YKAGM+H + DRP + + KEI VT+++ PP++ +G+
Sbjct: 48 EAVNKGIAPKPV-LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGL 106
Query: 224 VGY-IETPHGLPLF 262
GY I HGL F
Sbjct: 107 RGYKIHPMHGLLSF 120
Score = 40.3 bits (90), Expect = 0.060
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Frame = +1
Query: 373 ELGRKSIEKDFKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK* 537
E G K +E ++K+ + +RVIA T L +KK I+EI++ +
Sbjct: 175 EYGFKFLENNWKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERI 234
Query: 538 NGPENIWRNLSLFDSVFAQDEMIDCIGVTKGQRIQ 642
+ E + N D VF + + ID IGVTKG+ Q
Sbjct: 235 DYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQ 269
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 54.4 bits (125), Expect = 3e-06
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+KR++R +++++P++D V L AF YKAGM+H + D P S +E+
Sbjct: 15 FSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNAGQEVFTP 71
Query: 182 VTIIETPPM-VC 214
+TI+E PP+ VC
Sbjct: 72 ITILEAPPINVC 83
Score = 50.4 bits (115), Expect = 6e-05
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Frame = +1
Query: 382 RKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*N-GPENIW 558
RK++E D + + VRV+ HT KL +KK I+EI++ + N E +
Sbjct: 123 RKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILG 181
Query: 559 RNLSLFDSVFAQDEMIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTR--VFRKVACIGAW 732
+ L++ D VF + E++D IGVTKG+ Q G K+ +H R V R V IG W
Sbjct: 182 KQLNITD-VFQEGELVDTIGVTKGKGFQGQVKRWG--VKIQFGKHARKGVGRHVGSIGPW 238
Query: 733 HP 738
P
Sbjct: 239 QP 240
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 53.6 bits (123), Expect = 6e-06
Identities = 29/83 (34%), Positives = 43/83 (51%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
+YP+KR+R +V+ +P++ F GYK GM HV+ S +E A
Sbjct: 14 YYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFYGQERFYA 69
Query: 182 VTIIETPPMVCVGVVGYIETPHG 250
T+IE PP+ V V Y +TP+G
Sbjct: 70 ATVIEVPPLKVVAVRVYEKTPYG 92
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 53.2 bits (122), Expect = 8e-06
Identities = 26/84 (30%), Positives = 47/84 (55%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
+ P+ R++ +++A+PK D +P + A G+KAG +V DR K++V
Sbjct: 16 YSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNAGKQLVSL 74
Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
T++ TPP++ +G+ GY + GL
Sbjct: 75 GTVLVTPPVLILGIRGYSKDHDGL 98
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 52.8 bits (121), Expect = 1e-05
Identities = 28/83 (33%), Positives = 45/83 (54%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
+YP+ R++ +++++P + S PV + F G+K GMTHV R S + I
Sbjct: 14 YYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAGQPIFVP 71
Query: 182 VTIIETPPMVCVGVVGYIETPHG 250
VT+IE PP+ +G+ Y E G
Sbjct: 72 VTVIEVPPLDVIGIRLYDEDEEG 94
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 50.4 bits (115), Expect = 6e-05
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN + +
Sbjct: 16 FWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNINGERVFTP 65
Query: 182 VTIIETPPMVCVGVVGY 232
VT++E P ++ +G Y
Sbjct: 66 VTVLEAPELLVIGAKAY 82
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 44.8 bits (101), Expect = 0.003
Identities = 24/83 (28%), Positives = 45/83 (54%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
+ P+ R+R +++ +P+ +P L A G+KAG +V DR + K++V
Sbjct: 16 YSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHTPNAGKQLVSL 73
Query: 182 VTIIETPPMVCVGVVGYIETPHG 250
T++ TPP+ +G+ GY + +G
Sbjct: 74 GTVLVTPPLHVLGMRGYSKGHYG 96
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 44.4 bits (100), Expect = 0.004
Identities = 25/77 (32%), Positives = 39/77 (50%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F PKKRS R K + + +++ F K THV+R + SK + I++
Sbjct: 16 FLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVSSKSYQNPIIDE 75
Query: 182 VTIIETPPMVCVGVVGY 232
VT++E PP+ VG+ Y
Sbjct: 76 VTLMECPPIEVVGLCAY 92
Score = 44.4 bits (100), Expect = 0.004
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +1
Query: 577 DSVFAQDEMIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSF 756
+S+F ++++ID IG+TKG + G T+ P + R RKVACIG W P RV++
Sbjct: 190 NSIFHENDIIDAIGITKGHGTKGVVSRWGITR--LPRKTHRGLRKVACIGPWTP-SRVAW 246
Query: 757 TCS 765
T S
Sbjct: 247 TIS 249
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.079
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 29 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 166
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_A0R673 Cluster: Putative uncharacterized protein; n=1;
Mycobacterium smegmatis str. MC2 155|Rep: Putative
uncharacterized protein - Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155)
Length = 123
Score = 37.1 bits (82), Expect = 0.56
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +1
Query: 682 PVRHTRVFRKVACIGAWHPFLRVSFTCSSCWVQKRVIH 795
PVR FR CIG W P + SSCWV H
Sbjct: 9 PVREHLRFRPEDCIGCWQPEISFEEAMSSCWVMSEQAH 46
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 35.1 bits (77), Expect = 2.2
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = -2
Query: 298 DSLQTYAPPRQSKER*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTVRFSNHV 119
D L+ + KE SM L + HRR + ++ D+ LVD T++ V
Sbjct: 446 DQLKEFNHHTARKEMVSMMHLGYQYS-QRRHRRDVTAARAIADMILVDERDATMQVQAEV 504
Query: 118 GHTGLITDKSSQMNRFARVV 59
G GLITD +S ++ A V
Sbjct: 505 GGQGLITDIASTVSAVAGAV 524
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.1 bits (77), Expect = 2.2
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 163 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWT 252
E DRG CHH+ S GLCR C + P+ T
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAAT 65
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 3.9
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 14 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 187
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 188 IIETPPMVCVGVVG 229
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_UPI00015B40FA Cluster: PREDICTED: similar to CG2767-PA;
n=2; Nasonia vitripennis|Rep: PREDICTED: similar to
CG2767-PA - Nasonia vitripennis
Length = 356
Score = 33.5 bits (73), Expect = 6.9
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 490 HIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDEMIDCIGVTKGQRIQRCHFLV 660
H ++ + V+P T P I +N+ +FD +DEM G+ KG++ + HF +
Sbjct: 280 HAVQNGIIVLPKSTN---PGRIKQNIGIFDFALTEDEMQAMNGLDKGEKGRIFHFFI 333
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.1 bits (72), Expect = 9.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 364 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQ 507
WQD K I+KD+ + YC +R+ H +L ++ K HI+ +
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTE 75
>UniRef50_Q4WTI4 Cluster: C6 finger domain protein, putative; n=5;
Trichocomaceae|Rep: C6 finger domain protein, putative -
Aspergillus fumigatus (Sartorya fumigata)
Length = 410
Score = 33.1 bits (72), Expect = 9.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = -3
Query: 792 NNPFLDPARATSERHPKKGMPSSNAGNFPKDPCVSYGGKLLCVPNEKVTPLYPLPLGDTN 613
++PF P+ T P PSS+ GN + C+SY LC+ + ++ L P P+
Sbjct: 172 SSPFTLPSSLTLIDSPSVSSPSSDGGNSSQCTCLSY--LYLCLSH--LSSLAPFPISQHT 227
Query: 612 AVNHFILGK 586
+ FI K
Sbjct: 228 LCSLFIAAK 236
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 932,375,306
Number of Sequences: 1657284
Number of extensions: 20408271
Number of successful extensions: 49500
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 47445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49457
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74603367202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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