Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30190.Seq
         (809 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1N0T3 Cluster: Putative uncharacterized protein; n=1; ...    34   4.9  
UniRef50_A7QIW0 Cluster: Chromosome chr2 scaffold_105, whole gen...    33   8.5  
UniRef50_A5BNM1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.5  

>UniRef50_Q1N0T3 Cluster: Putative uncharacterized protein; n=1;
           Oceanobacter sp. RED65|Rep: Putative uncharacterized
           protein - Oceanobacter sp. RED65
          Length = 244

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 737 HFFYPSISNVSXLLCGLVVHYSIVLDVKPFREEQPIVFPTLK 612
           HFF P    +  +L G +V  SI+L + P+ + +P+V+ T K
Sbjct: 8   HFFDPRSFTIPSILSGTIVLSSIILLLAPWSKSEPMVYKTPK 49


>UniRef50_A7QIW0 Cluster: Chromosome chr2 scaffold_105, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr2 scaffold_105, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 572

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 10/16 (62%), Positives = 16/16 (100%)
 Frame = -3

Query: 633 HCFSDVKEEDLITCNI 586
           HCFSD+K+++L+TC+I
Sbjct: 179 HCFSDIKDQELLTCSI 194


>UniRef50_A5BNM1 Cluster: Putative uncharacterized protein; n=1; Vitis
            vinifera|Rep: Putative uncharacterized protein - Vitis
            vinifera (Grape)
          Length = 1220

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 10/16 (62%), Positives = 16/16 (100%)
 Frame = -3

Query: 633  HCFSDVKEEDLITCNI 586
            HCFSD+K+++L+TC+I
Sbjct: 1137 HCFSDIKDQELLTCSI 1152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 713,869,247
Number of Sequences: 1657284
Number of extensions: 12866933
Number of successful extensions: 25801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25796
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69966202150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)