Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0255.Seq
         (505 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D57655 Cluster: PREDICTED: similar to CG1962-PA,...    36   0.69 
UniRef50_A4A2J6 Cluster: Putative uncharacterized protein; n=1; ...    33   3.7  

>UniRef50_UPI0000D57655 Cluster: PREDICTED: similar to CG1962-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG1962-PA, isoform A - Tribolium castaneum
          Length = 707

 Score = 35.5 bits (78), Expect = 0.69
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
 Frame = -1

Query: 340 ERSMGGRH----TTGICASDERCQRI*ISVK*KRMRVPL*RKMRAQDSVNQIREK*TSLE 173
           E S G +H    TT I + + RC+ +  ++   R++V    K RAQ     +  K T   
Sbjct: 107 ENSAGKKHIKTLTTNIESLETRCEELQTTIDDLRLQVDA-LKRRAQ---RPVEVKSTPPA 162

Query: 172 CRVRRHTSHY-ERAIRVYITPTTKTIRASCCRNSQPLE 62
               RH   Y E A      P T TI A C +NS P++
Sbjct: 163 TITLRHVEKYDEEATPTSPEPKTHTIDAQCVKNSTPIK 200


>UniRef50_A4A2J6 Cluster: Putative uncharacterized protein; n=1;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 761

 Score = 33.1 bits (72), Expect = 3.7
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +2

Query: 59  YFEGLRVSTARSSNRFRRWSYINPNRSLVVRRVASYSALEARSLFSYLIHRI 214
           YF G R    R SNRF  W       +L+   VA  S L+A + FS+ IH +
Sbjct: 30  YFRGWRNLRQRGSNRFPVWRLAAFCGALLTIFVALQSPLDALAPFSFQIHMV 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,818,832
Number of Sequences: 1657284
Number of extensions: 7191992
Number of successful extensions: 18959
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18956
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)