Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0098.Seq
         (846 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q380W9 Cluster: Putative uncharacterized protein; n=1; ...    34   5.2  

>UniRef50_Q380W9 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 232

 Score = 33.9 bits (74), Expect = 5.2
 Identities = 19/81 (23%), Positives = 33/81 (40%)
 Frame = -3

Query: 700 DFFIYRCICFWCEVIFTKITIYSNLLTAIIYNQQYIQYVKCLCI*KRIYVCLYVQLKLSY 521
           +++ +    ++C   +  I IY+   T + Y   Y  YV C C    I +     L   Y
Sbjct: 84  NYYYHYYYYYYCS--YYNIRIYTP--TTLFYYHYYYYYVHCYCSYYNIRIYTLTTLSYHY 139

Query: 520 VVXXXXXXXXLYFNIKLHLIT 458
                      Y+NI++H +T
Sbjct: 140 YYHHHYYYYCSYYNIRIHTLT 160


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,058,880
Number of Sequences: 1657284
Number of extensions: 13061966
Number of successful extensions: 22231
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 21339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22212
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74193458591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)