Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0074.Seq
         (583 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62249 Cluster: 40S ribosomal protein S16; n=64; Eukary...    90   3e-17
UniRef50_Q4PM67 Cluster: Ribosomal protein S16; n=5; Eukaryota|R...    89   5e-17
UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    72   9e-12
UniRef50_Q5AQG2 Cluster: Putative uncharacterized protein; n=1; ...    71   3e-11
UniRef50_Q7R487 Cluster: GLP_480_84573_84097; n=1; Giardia lambl...    66   6e-10
UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87; Eukary...    64   2e-09
UniRef50_Q8SSC2 Cluster: 40S RIBOSOMAL PROTEIN S16; n=1; Encepha...    63   5e-09
UniRef50_Q4PHH7 Cluster: Putative uncharacterized protein; n=1; ...    62   7e-09
UniRef50_Q4Q9A5 Cluster: 40S ribosomal protein S16, putative; n=...    57   3e-07
UniRef50_Q3LWA6 Cluster: Ribosomal protein S16; n=1; Bigelowiell...    51   2e-05
UniRef50_A0RXP4 Cluster: 30S ribosomal protein S9P; n=2; Thermop...    50   5e-05
UniRef50_Q9YB48 Cluster: 30S ribosomal protein S9P; n=10; Thermo...    45   0.001
UniRef50_A5PLD0 Cluster: Zgc:165536 protein; n=12; Fungi/Metazoa...    42   0.008
UniRef50_O59299 Cluster: 30S ribosomal protein S9P; n=4; Archaea...    40   0.032
UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;...    40   0.043
UniRef50_UPI0001555F10 Cluster: PREDICTED: hypothetical protein,...    34   2.1  
UniRef50_Q5T2E6 Cluster: Uncharacterized protein C10orf76; n=38;...    33   4.9  

>UniRef50_P62249 Cluster: 40S ribosomal protein S16; n=64;
           Eukaryota|Rep: 40S ribosomal protein S16 - Homo sapiens
           (Human)
          Length = 146

 Score = 90.2 bits (214), Expect = 3e-17
 Identities = 41/45 (91%), Positives = 43/45 (95%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           EASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKS R
Sbjct: 102 EASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146


>UniRef50_Q4PM67 Cluster: Ribosomal protein S16; n=5; Eukaryota|Rep:
           Ribosomal protein S16 - Ixodes scapularis (Black-legged
           tick) (Deer tick)
          Length = 148

 Score = 89.4 bits (212), Expect = 5e-17
 Identities = 40/45 (88%), Positives = 42/45 (93%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E SKKEIKD L+QYDR+LLVADPRRCEPKKFGGPGARARYQKS R
Sbjct: 104 EQSKKEIKDTLIQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148


>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 72.1 bits (169), Expect = 9e-12
 Identities = 39/62 (62%), Positives = 42/62 (67%)
 Frame = +3

Query: 60  SFLTATILVYAIXXXXXXXXXXRLALQLFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAG 239
           SFLTA  L+YAI          RLALQ  LVK FKV SF+L+GL RV Y YFSSLPPR G
Sbjct: 42  SFLTAATLIYAIGAGITAAAGTRLALQWILVKGFKVDSFQLQGLERVLYCYFSSLPPRVG 101

Query: 240 SG 245
           SG
Sbjct: 102 SG 103


>UniRef50_Q5AQG2 Cluster: Putative uncharacterized protein; n=1;
           Emericella nidulans|Rep: Putative uncharacterized
           protein - Emericella nidulans (Aspergillus nidulans)
          Length = 155

 Score = 70.5 bits (165), Expect = 3e-11
 Identities = 33/45 (73%), Positives = 36/45 (80%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E SK ++K   VQYDR+LLVAD RR EPKKFGG GARARYQKS R
Sbjct: 111 EHSKNQLKQAFVQYDRTLLVADNRRAEPKKFGGRGARARYQKSYR 155


>UniRef50_Q7R487 Cluster: GLP_480_84573_84097; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_480_84573_84097 - Giardia lamblia
           ATCC 50803
          Length = 158

 Score = 66.1 bits (154), Expect = 6e-10
 Identities = 30/45 (66%), Positives = 36/45 (80%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           EA++ E++  LV YDR L+V+DPRRCE KKFGG GARAR QKS R
Sbjct: 114 EAARSELRAKLVSYDRQLVVSDPRRCEAKKFGGRGARARRQKSYR 158


>UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87;
           Eukaryota|Rep: 40S ribosomal protein S16 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 143

 Score = 64.5 bits (150), Expect = 2e-09
 Identities = 29/45 (64%), Positives = 34/45 (75%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E SK E+K     YDR+LL+AD RR EPKKFGG GAR+R+QKS R
Sbjct: 99  EQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 143


>UniRef50_Q8SSC2 Cluster: 40S RIBOSOMAL PROTEIN S16; n=1;
           Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S16
           - Encephalitozoon cuniculi
          Length = 145

 Score = 62.9 bits (146), Expect = 5e-09
 Identities = 30/45 (66%), Positives = 35/45 (77%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E  K+EI+  L+ +DR  LVAD R+ EPKKFGGPGARARYQKS R
Sbjct: 101 EWKKQEIQKRLLDFDRFSLVADSRKREPKKFGGPGARARYQKSYR 145


>UniRef50_Q4PHH7 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 199

 Score = 62.5 bits (145), Expect = 7e-09
 Identities = 29/44 (65%), Positives = 34/44 (77%)
 Frame = +3

Query: 330 ASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           AS  E++ + V YDR+LL+AD RR EPKKFGG GARAR QKS R
Sbjct: 156 ASALELRQLFVAYDRTLLIADTRRSEPKKFGGHGARARRQKSYR 199


>UniRef50_Q4Q9A5 Cluster: 40S ribosomal protein S16, putative; n=7;
           Trypanosomatidae|Rep: 40S ribosomal protein S16,
           putative - Leishmania major
          Length = 149

 Score = 57.2 bits (132), Expect = 3e-07
 Identities = 25/45 (55%), Positives = 31/45 (68%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E  K  +KD  + YD+ LL+ADPRRCEPKK+G   AR R+ KS R
Sbjct: 105 EVEKAALKDKFLAYDKFLLIADPRRCEPKKWGRHSARTRFTKSYR 149


>UniRef50_Q3LWA6 Cluster: Ribosomal protein S16; n=1; Bigelowiella
           natans|Rep: Ribosomal protein S16 - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 139

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
 Frame = +3

Query: 330 ASKKEIKDI-LVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           ASK  +  I  + YD+ LL++D  R EPKK+GG GARAR+QKS R
Sbjct: 95  ASKSNLLKIKYLTYDKKLLISDVSRIEPKKYGGLGARARFQKSYR 139


>UniRef50_A0RXP4 Cluster: 30S ribosomal protein S9P; n=2;
           Thermoprotei|Rep: 30S ribosomal protein S9P -
           Cenarchaeum symbiosum
          Length = 149

 Score = 49.6 bits (113), Expect = 5e-05
 Identities = 21/45 (46%), Positives = 32/45 (71%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           + ++++++  +  +D+ L+  D RR EPKKFGGPGAR R QKS R
Sbjct: 105 KTAREDLRKRIGDFDKYLISGDARRKEPKKFGGPGARRRKQKSYR 149


>UniRef50_Q9YB48 Cluster: 30S ribosomal protein S9P; n=10;
           Thermoprotei|Rep: 30S ribosomal protein S9P - Aeropyrum
           pernix
          Length = 151

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +3

Query: 294 DRDSGNLVNPFEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           +     L    +   ++++   +++DR++LV DPRR EP+K+    AR R+QKS R
Sbjct: 96  EESDDELCRMMDKISRDLRTAFLEHDRTMLVGDPRRTEPEKYMRYSARRRWQKSYR 151


>UniRef50_A5PLD0 Cluster: Zgc:165536 protein; n=12; Fungi/Metazoa
           group|Rep: Zgc:165536 protein - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 55

 Score = 42.3 bits (95), Expect = 0.008
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -3

Query: 326 EWINEIPTVPIYYLAKPHPRKAA 258
           EW+NEIPTVP  YLAKP PR+ A
Sbjct: 11  EWMNEIPTVPTCYLAKPQPRERA 33


>UniRef50_O59299 Cluster: 30S ribosomal protein S9P; n=4;
           Archaea|Rep: 30S ribosomal protein S9P - Pyrococcus
           horikoshii
          Length = 135

 Score = 40.3 bits (90), Expect = 0.032
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +3

Query: 345 IKDILVQYDRSLLVADPRRCEPKK--FGGPGARARYQKSXR 461
           +K+  ++YDR++LV DPRR EP K      G RA+ QKS R
Sbjct: 95  LKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135


>UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 493

 Score = 39.9 bits (89), Expect = 0.043
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +2

Query: 188 PRKSPVSLFFVTTSPCREW 244
           PRKSPV LFFVTTSP REW
Sbjct: 24  PRKSPVLLFFVTTSPGREW 42


>UniRef50_UPI0001555F10 Cluster: PREDICTED: hypothetical protein,
           partial; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           hypothetical protein, partial - Ornithorhynchus anatinus
          Length = 299

 Score = 34.3 bits (75), Expect = 2.1
 Identities = 27/78 (34%), Positives = 34/78 (43%)
 Frame = -1

Query: 475 FLKA*RXDFWYLARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASNGLTRFPLSL 296
           FL   R DF+     PGP     S R  ++   LLS C        F+   G  RFPLS 
Sbjct: 203 FLLYYRPDFFLAGETPGPARPPPSTRTPASPGTLLSVCGHC-----FQVGVGPPRFPLSD 257

Query: 295 STI*RNHIQGRQQAANYP 242
            T  R+ + GR+  A  P
Sbjct: 258 PTATRSRV-GRRLGAETP 274


>UniRef50_Q5T2E6 Cluster: Uncharacterized protein C10orf76; n=38;
           Eumetazoa|Rep: Uncharacterized protein C10orf76 - Homo
           sapiens (Human)
          Length = 689

 Score = 33.1 bits (72), Expect = 4.9
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 306 GNLVNPFEASKKEIKD-ILVQYDRSLLVADPRRCEPK 413
           G L+    ASKK +K+ +++ YD   +  DP +C P+
Sbjct: 8   GGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,470,061
Number of Sequences: 1657284
Number of extensions: 10114185
Number of successful extensions: 22433
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22428
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40404161459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)