Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0106
(699 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P56282 Cluster: DNA polymerase epsilon subunit 2; n=32;... 108 1e-22
UniRef50_UPI00015B59AB Cluster: PREDICTED: similar to DNA polyme... 98 2e-19
UniRef50_UPI0000DB6FE0 Cluster: PREDICTED: similar to DNA polyme... 95 1e-18
UniRef50_Q9VRQ7 Cluster: CG10489-PA; n=5; Diptera|Rep: CG10489-P... 94 3e-18
UniRef50_UPI0000D56869 Cluster: PREDICTED: similar to DNA polyme... 87 5e-16
UniRef50_A6R1W8 Cluster: Predicted protein; n=1; Ajellomyces cap... 60 7e-08
UniRef50_Q4RMH0 Cluster: Chromosome 10 SCAF15019, whole genome s... 56 1e-06
UniRef50_Q0UFD3 Cluster: Putative uncharacterized protein; n=1; ... 56 1e-06
UniRef50_A1DG39 Cluster: DNA polymerase epsilon subunit B, putat... 54 3e-06
UniRef50_Q5KEX9 Cluster: DNA polymerase epsilon subunit B; n=2; ... 54 3e-06
UniRef50_Q19196 Cluster: Probable DNA polymerase epsilon subunit... 53 8e-06
UniRef50_O94263 Cluster: DNA polymerase epsilon subunit B; n=1; ... 53 8e-06
UniRef50_Q56XM7 Cluster: DNA polymerase epsilon subunit B-like p... 49 1e-04
UniRef50_Q54Y85 Cluster: Putative DNA polymerase epsilon subunit... 46 7e-04
UniRef50_Q872F0 Cluster: Related to DNA directed DNA polymerase ... 46 7e-04
UniRef50_Q012T2 Cluster: DEAD-box protein abstrakt; n=3; Ostreoc... 44 0.004
UniRef50_Q1DZL2 Cluster: Putative uncharacterized protein; n=1; ... 44 0.005
UniRef50_A4RI24 Cluster: Putative uncharacterized protein; n=1; ... 43 0.006
UniRef50_A2Y0P0 Cluster: Putative uncharacterized protein; n=3; ... 41 0.025
UniRef50_A5TUI8 Cluster: Putative uncharacterized protein; n=2; ... 41 0.034
UniRef50_A7PGG4 Cluster: Chromosome chr17 scaffold_16, whole gen... 40 0.044
UniRef50_Q6C030 Cluster: DNA polymerase epsilon subunit B; n=1; ... 34 2.9
UniRef50_Q3JEY1 Cluster: Excinuclease ABC, A subunit; n=4; Prote... 34 3.9
UniRef50_Q47U78 Cluster: Putative uncharacterized protein; n=1; ... 33 6.7
UniRef50_Q9AIG7 Cluster: Elongation factor G; n=2; Candidatus Ca... 33 6.7
UniRef50_Q20K05 Cluster: Putative penicillin-binding protein; n=... 33 6.7
UniRef50_A0EA61 Cluster: Chromosome undetermined scaffold_85, wh... 33 8.9
UniRef50_A7TE76 Cluster: Putative uncharacterized protein; n=1; ... 33 8.9
>UniRef50_P56282 Cluster: DNA polymerase epsilon subunit 2; n=32;
Eumetazoa|Rep: DNA polymerase epsilon subunit 2 - Homo
sapiens (Human)
Length = 527
Score = 108 bits (259), Expect = 1e-22
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 6/156 (3%)
Frame = +1
Query: 250 IRKEHLEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKN----NLYP 417
I + +E A +ECS S E E V N+I AF+IP+ Y++ER KF+ + N NL+
Sbjct: 62 IERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFG 121
Query: 418 EPKWKAQFLIDRYEIIWQRTVRNKLFAQEACLHWAEEK--YFQLRKIEALLSSSSRIDDV 591
P+ KA+ +RY I+ QRT R++LF +E FQL+ IE LL S+++I D
Sbjct: 122 TPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDA 181
Query: 592 IVLGLLIQLTEGNITWKIQLGSVVLDMSPTRYHSRL 699
IVLG++ QL EG + G+V LD+S ++HS L
Sbjct: 182 IVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGL 217
>UniRef50_UPI00015B59AB Cluster: PREDICTED: similar to DNA
polymerase epsilon subunit B; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to DNA polymerase
epsilon subunit B - Nasonia vitripennis
Length = 537
Score = 98.3 bits (234), Expect = 2e-19
Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Frame = +1
Query: 241 TARIRKEHLEIAFKEC--SASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLY 414
TA++ E+++ A KEC S L+E+E+VLNVID F +PK+ YD + K+V L+
Sbjct: 58 TAQVELENIKQALKECVKPESTLKESESVLNVIDVFTVPKVVYDLNKKKYVLQKINEELF 117
Query: 415 PEPKWKAQFLIDRYEIIWQRTVRNKLFAQEACLHWAEEKYFQLRKIEALLSSSSRIDDVI 594
P+ K+K+ +R +++W RT+++ FA EE QL IE LL S S+ DV
Sbjct: 118 PDAKYKSLVFKERLDLLWYRTLKHATFAPSK-FGKTEENKLQLVPIEYLL-SESKTKDVC 175
Query: 595 VLGLLIQLTEGNITWKIQLGSVVLDM 672
V+GLL QL EG + GSV +++
Sbjct: 176 VMGLLAQLKEGQYYLEDYGGSVKINL 201
>UniRef50_UPI0000DB6FE0 Cluster: PREDICTED: similar to DNA
polymerase epsilon subunit 2; n=1; Apis mellifera|Rep:
PREDICTED: similar to DNA polymerase epsilon subunit 2 -
Apis mellifera
Length = 454
Score = 95.5 bits (227), Expect = 1e-18
Identities = 53/137 (38%), Positives = 85/137 (62%), Gaps = 1/137 (0%)
Frame = +1
Query: 265 LEIAFKE-CSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQF 441
L++A +E + L++TETVLNVID F++PK+ YD + KF+ +LY E ++K+
Sbjct: 47 LKLAIQEYIRPNTLKDTETVLNVIDVFDVPKIKYDLSKKKFILENILPDLYAEAQYKSTI 106
Query: 442 LIDRYEIIWQRTVRNKLFAQEACLHWAEEKYFQLRKIEALLSSSSRIDDVIVLGLLIQLT 621
DR+E++W RT+R++LF L +E + +L IE LLS + + +V V+GLL +LT
Sbjct: 107 FKDRFELLWYRTLRHELFIPPK-LGEKKENWIELTSIEYLLSETKK-GNVYVMGLLTELT 164
Query: 622 EGNITWKIQLGSVVLDM 672
EG + G + LD+
Sbjct: 165 EGQYYLEDTGGFIKLDL 181
>UniRef50_Q9VRQ7 Cluster: CG10489-PA; n=5; Diptera|Rep: CG10489-PA -
Drosophila melanogaster (Fruit fly)
Length = 525
Score = 93.9 bits (223), Expect = 3e-18
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Frame = +1
Query: 241 TARIRKEHLEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPE 420
T + + LE A E + GL+E ETV +IDAF +P+ Y+ KF L
Sbjct: 61 TPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTA 120
Query: 421 PKWKAQFLIDRYEIIWQRTVRNKLFA----QEACLHWAEEKYFQLRKIEALLSSSSRIDD 588
P+ K+ ++ RY ++ Q+T+R+ LFA Q+ A+ K F+L+ E LL++S+ + +
Sbjct: 121 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLATSA-MKE 179
Query: 589 VIVLGLLIQLTEGNITWKIQLGSVVLDMSPTRYHS 693
+VLGLL QL EG + G V LD++ R+H+
Sbjct: 180 AVVLGLLTQLKEGKFYVEDPTGCVQLDLTGARFHA 214
Score = 41.5 bits (93), Expect = 0.019
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +2
Query: 83 VRAEVNNAFKLSGFTIRKEASTYVADQITSMTPHERRAILDKLTSHILKQCISQPVLGKN 262
+R + N FKL GF IR E S+Y+A+Q+ ER L +T ++ Q + P + +
Sbjct: 8 LRKRITNTFKLCGFLIRSENSSYLAEQLLPFDAAERDKWLTVITENLQSQKLLTPHVERA 67
Query: 263 TWKSPSKNALHRV 301
+ + N L+RV
Sbjct: 68 ALEK-AINELNRV 79
>UniRef50_UPI0000D56869 Cluster: PREDICTED: similar to DNA
polymerase epsilon subunit 2; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to DNA polymerase
epsilon subunit 2 - Tribolium castaneum
Length = 492
Score = 86.6 bits (205), Expect = 5e-16
Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Frame = +1
Query: 250 IRKEHLEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKW 429
I KEH++ A + C SG + ET+ +VI+AF+ PK+SY+ +R ++ + +K L
Sbjct: 67 IEKEHIDRALEVCLKSGYDRNETIFSVINAFDFPKVSYNLDRKQYYLTENKPRLLSSADS 126
Query: 430 KAQFLIDRYEIIWQRTVRNKLFAQEACLHWAEEKYFQLRKIEALLS-SSSRIDDVIVLGL 606
KAQ DRY I RT RN F Q+A + +L+ ++ LL+ S+ ++ +VLG
Sbjct: 127 KAQLFADRYATILHRTKRN--FIQKATEN--TNIKLELQTVDYLLTLSNVSLNHTLVLGS 182
Query: 607 LIQLTEGNITWKIQLGSVVLDMSPTRYHSRL 699
L+Q++EG + G V LD+S Y+ L
Sbjct: 183 LLQVSEGKYYLEDPTGIVQLDLSHAVYYGGL 213
>UniRef50_A6R1W8 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 748
Score = 59.7 bits (138), Expect = 7e-08
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Frame = +1
Query: 250 IRKEHLEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKW 429
I +E LEI S L +T + +I AF + Y+ + F +L+P P
Sbjct: 147 IHEESLEIE----EDSSLNDTRRWIKIISAFEQHRPVYNINKKNFDIITSPPSLFPPPYQ 202
Query: 430 KAQFLIDRYEIIWQRTVRNKLF----AQEACLHWAEEKYFQLRKIEALLSSSSRIDDVIV 597
+A L DRY II+QR +RN+ F H + +Y++L I LL + ++
Sbjct: 203 RANILRDRYNIIYQRILRNEAFRIPLQGSTSSHSSTTRYYKLTSIANLLGRTG--TSHLL 260
Query: 598 LGLLIQLTEGNITWKIQLGSVVLDMSPTR 684
LGLL G+++ GS+ LD++ R
Sbjct: 261 LGLLSMSPAGDLSLTDPTGSIALDITHAR 289
>UniRef50_Q4RMH0 Cluster: Chromosome 10 SCAF15019, whole genome
shotgun sequence; n=5; Clupeocephala|Rep: Chromosome 10
SCAF15019, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 560
Score = 55.6 bits (128), Expect = 1e-06
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Frame = +1
Query: 265 LEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKN-NLYPEP------ 423
+E A ++CS S E + L ++ P+ + N + F + + +P P
Sbjct: 66 VESAVQDCSQSCDETIDNFLISLEPLMCPR--FMNSLSFFAPTFRLHMTTHPAPSLCGLA 123
Query: 424 KWKAQFLIDRYEIIWQRTVRNKLFAQEACLHWAEE--KYFQLRKIEALLSSSSRIDDVIV 597
K KA+ +RY I+ QR R++LF A EE FQL+ IEALL S++++ +VIV
Sbjct: 124 KDKAELFRERYTILQQRIHRHELFTPPAIGTGVEEGENKFQLKTIEALLGSTAKMGEVIV 183
Query: 598 LGLLIQLTE 624
LG++ QL E
Sbjct: 184 LGMITQLKE 192
Score = 41.1 bits (92), Expect = 0.025
Identities = 17/57 (29%), Positives = 35/57 (61%)
Frame = +2
Query: 83 VRAEVNNAFKLSGFTIRKEASTYVADQITSMTPHERRAILDKLTSHILKQCISQPVL 253
+++ V+ AFK+ G +R EAS Y+ + + S+ P E +++K+ + KQ +S ++
Sbjct: 5 IKSRVSAAFKMRGLVLRPEASKYLVEVLESVGPSELEDVIEKVLDAVEKQPLSSNMI 61
>UniRef50_Q0UFD3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 769
Score = 55.6 bits (128), Expect = 1e-06
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = +1
Query: 265 LEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFL 444
LE+ E L++ L VI AF PK+ Y+ + F KS K +L+P+P K Q
Sbjct: 187 LEVEDHEDEDEHLKDPRDWLKVIGAFEQPKMMYNATQKHFDKSSSKPSLFPDPSHKTQLF 246
Query: 445 IDRYEIIWQRTVRNKLF 495
RY I+ QR +RN+ F
Sbjct: 247 RQRYHIVHQRILRNETF 263
>UniRef50_A1DG39 Cluster: DNA polymerase epsilon subunit B,
putative; n=7; Trichocomaceae|Rep: DNA polymerase
epsilon subunit B, putative - Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
Length = 783
Score = 54.4 bits (125), Expect = 3e-06
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Frame = +1
Query: 322 LNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFLIDRYEIIWQRTVRNKLF-- 495
+ +++AF++P+L+Y+ ++ F + K L+P+ K DRY I+ QR +RN+ F
Sbjct: 215 IKIVEAFDMPRLTYNVDKKYFELTKSKATLFPQASHKTSVFRDRYNIVHQRLLRNETFQS 274
Query: 496 ---------AQEACLHWAEEKYFQLRKIEALLSSSSRIDDVIVLGLLIQLTEGNITWKIQ 648
+ +A + ++L I LL S ++LGLL G+++
Sbjct: 275 SLSYSTGHSLKRPSSSFAPTQCYRLTPIANLLGRSG--TSHLLLGLLSISPAGDLSLVDL 332
Query: 649 LGSVVLDMSPTR 684
GSV LDMS R
Sbjct: 333 TGSVALDMSHAR 344
>UniRef50_Q5KEX9 Cluster: DNA polymerase epsilon subunit B; n=2;
Filobasidiella neoformans|Rep: DNA polymerase epsilon
subunit B - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 541
Score = 54.0 bits (124), Expect = 3e-06
Identities = 34/120 (28%), Positives = 64/120 (53%)
Frame = +1
Query: 313 ETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFLIDRYEIIWQRTVRNKL 492
E+ +V+D+F++P + YD R+ FV+S + ++ + ++ FL +R+ II + +RN+
Sbjct: 95 ESHFSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQASSRSAFLRERWAIIKEIILRNEN 154
Query: 493 FAQEACLHWAEEKYFQLRKIEALLSSSSRIDDVIVLGLLIQLTEGNITWKIQLGSVVLDM 672
F A Y +L I LL + ++ ++ G+L + EG + + VVLDM
Sbjct: 155 FTPPAIGGHDRANYLKLTSIRNLLGRAGQL--FLLFGMLARNEEGKLCLEDGESRVVLDM 212
>UniRef50_Q19196 Cluster: Probable DNA polymerase epsilon subunit 2;
n=2; Caenorhabditis|Rep: Probable DNA polymerase epsilon
subunit 2 - Caenorhabditis elegans
Length = 534
Score = 52.8 bits (121), Expect = 8e-06
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
Frame = +1
Query: 250 IRKEHLEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKW 429
I +E + F++C + G ++ +LNV DAF++ +D + K V K +L +
Sbjct: 66 ISEELIRDTFRQCKSKGTQDAGKLLNVFDAFSLQPYDFDADLRKMVLRKEKTSLAADSSS 125
Query: 430 KAQFLIDRYEIIWQRTVRNKLFAQEACLHWAEEKYFQLRKIEALLSSSSRIDDVIVLGLL 609
+ R+ I+ QR +R C A K F+ E L SS+ + V+VLG+L
Sbjct: 126 FSHAARQRFFIVKQRAMR--------C---ASLKNFKFTTCEILGSSTKHLQSVVVLGML 174
Query: 610 IQLTEGNITWKIQLGSVVLDM-SPTRYHSRL 699
Q + GSV ++ T++H L
Sbjct: 175 TQQKADCYHIEDLSGSVEVEFKEDTKFHHAL 205
>UniRef50_O94263 Cluster: DNA polymerase epsilon subunit B; n=1;
Schizosaccharomyces pombe|Rep: DNA polymerase epsilon
subunit B - Schizosaccharomyces pombe (Fission yeast)
Length = 594
Score = 52.8 bits (121), Expect = 8e-06
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Frame = +1
Query: 208 VNFTHFKTMYFTARIRKEHLEIAFKECSASGLEET---ETVLNVIDAFNIPKLSYDNERN 378
+N H + AR++ +F S S + ET E V+DAF +PK YD+ R
Sbjct: 98 LNVPHEVRVSSLARVQTLETTGSFLNSSNSEIRETIKNEKYFRVLDAFKMPKFKYDSSRK 157
Query: 379 KFVKSVHKNNLYPEPKWKAQFLIDRYEIIWQRTVRNKLFAQEACL-HWAEEKYFQLRKIE 555
FV S L L R+ +++ R +RN+ F + +++ +QL I
Sbjct: 158 VFVLSKQSPTLMASASACTDMLNRRFNVVYSRILRNESFQTPSFSGSFSQTGTYQLTPIR 217
Query: 556 ALLSSSSRIDDVIVLGLLIQLTEGNITWKIQLGS-VVLDMS 675
LL + + ++ GLL +G + W L S V LD+S
Sbjct: 218 NLLGRAG--NTFLLFGLLTIAPDGTL-WLEDLDSQVQLDVS 255
>UniRef50_Q56XM7 Cluster: DNA polymerase epsilon subunit B-like
protein; n=4; Magnoliophyta|Rep: DNA polymerase epsilon
subunit B-like protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 526
Score = 49.2 bits (112), Expect = 1e-04
Identities = 32/121 (26%), Positives = 62/121 (51%)
Frame = +1
Query: 322 LNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFLIDRYEIIWQRTVRNKLFAQ 501
L +IDAF +PK YD+ + +F + ++ E K +++ ++ QR R + F++
Sbjct: 91 LAIIDAFLVPKFGYDSVKKRFNEHTSSLPIHGEASAKTALYREQFMLLSQRVSRAEHFSR 150
Query: 502 EACLHWAEEKYFQLRKIEALLSSSSRIDDVIVLGLLIQLTEGNITWKIQLGSVVLDMSPT 681
A AE F+ +I ++ S S+ V+G++ QL +G+ + SV +D+S
Sbjct: 151 PA--FDAEMSQFENNEISSIQSLISQRGRKWVMGVISQLEDGHFYLEDLSASVEIDLSKA 208
Query: 682 R 684
+
Sbjct: 209 K 209
>UniRef50_Q54Y85 Cluster: Putative DNA polymerase epsilon subunit B;
n=1; Dictyostelium discoideum AX4|Rep: Putative DNA
polymerase epsilon subunit B - Dictyostelium discoideum
AX4
Length = 676
Score = 46.4 bits (105), Expect = 7e-04
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Frame = +1
Query: 322 LNVIDAFNIPKLSYDNERNKFVKSVH-KNNLYPEPKWKAQFLIDRYEIIWQRTVRNKLFA 498
L VIDAFN P ++D+ +F+KS + +L+ K+ RY + QRT RN F+
Sbjct: 80 LKVIDAFNTPLFNFDSNSKQFIKSENFDRSLHGSSNSKSDLYRKRYLKVLQRTERNDYFS 139
Query: 499 QEA-CLHWAEEKYFQLRKIEALLSSSSRIDDVIVLGLLIQLTEGNITWKIQLGSVVLDMS 675
+ +Y + + +LL ++ R VLG + Q+ E + +V +D+S
Sbjct: 140 TPVLASDKLKNEYQTITPLSSLLGNTGRKH---VLGTISQIEEDQFYIEDLNTNVKIDIS 196
Query: 676 PTRY 687
++
Sbjct: 197 KAKF 200
>UniRef50_Q872F0 Cluster: Related to DNA directed DNA polymerase II
chain B; n=7; Pezizomycotina|Rep: Related to DNA
directed DNA polymerase II chain B - Neurospora crassa
Length = 851
Score = 46.4 bits (105), Expect = 7e-04
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Frame = +1
Query: 322 LNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFLIDRYEIIWQRTVRNKLF-- 495
L VI AF+ P+L Y+ + F + K +L P K +RY +I QR +RN+ F
Sbjct: 238 LKVIHAFDQPRLMYNVGKKHFERDPSKPSLLPAASHKTDAFRNRYNVIHQRILRNEAFQS 297
Query: 496 --AQEACLHW-AEEKYFQLRKIEALLSSSSRI-DDVIVLGLLIQLTEGNITWKIQLGSVV 663
Q + L KI + + R + ++LG+L+ L G++ G++
Sbjct: 298 SSVQGSSLRQRTNANGLSSHKITPIANLLGRHGSNHMLLGMLVVLPTGSLAISDLTGTIT 357
Query: 664 LDMS 675
LD+S
Sbjct: 358 LDLS 361
>UniRef50_Q012T2 Cluster: DEAD-box protein abstrakt; n=3;
Ostreococcus|Rep: DEAD-box protein abstrakt -
Ostreococcus tauri
Length = 1025
Score = 44.0 bits (99), Expect = 0.004
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Frame = +1
Query: 283 ECSASGLEETETV--LNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFLIDRY 456
E A+G + L V DA + +YD +R F ++ + + K DR+
Sbjct: 567 EARATGTDRASASDGLTVCDAHATRRYAYDAQRRTFDETRRAARAAGQAESKIDLYRDRF 626
Query: 457 EIIWQRTVRNKLFAQEACLHWAEEKYFQLRKIEALLSSSSRIDDVIVLGLLIQLTEGNIT 636
++ QR R++ FA+ + E+ +L I +LL S + ++GLL QL +G
Sbjct: 627 LLLQQRLARSRQFARSSLKGTRREEGAELSTINSLLGVSK--EKKYIMGLLSQLEDGVFY 684
Query: 637 WKIQLGSVVLDMS 675
+ G++ +D++
Sbjct: 685 MEDLSGTIRVDLT 697
>UniRef50_Q1DZL2 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 610
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/86 (26%), Positives = 46/86 (53%)
Frame = +1
Query: 322 LNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFLIDRYEIIWQRTVRNKLFAQ 501
+ V++AF+ P+L Y+ ++ F S +++P + DRY ++QR +RN F Q
Sbjct: 165 IRVVNAFDQPRLLYNMDKRNFALSPSSASVFPSSSSRIDAFRDRYNRVYQRVLRNSAFRQ 224
Query: 502 EACLHWAEEKYFQLRKIEALLSSSSR 579
+ + Q R++E+ SS+++
Sbjct: 225 PSTVS------RQSRQLESSTSSTNK 244
>UniRef50_A4RI24 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 865
Score = 43.2 bits (97), Expect = 0.006
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Frame = +1
Query: 301 LEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFLIDRYEIIWQRTV 480
L + L V+ A+ P++ Y+ + F + K ++ P K +R+ +I QR +
Sbjct: 229 LSDPRKWLKVVGAYEQPRMVYNVAKKHFERDASKPSILPTASHKTLLFRNRFNVIHQRLL 288
Query: 481 RNKLFAQEACLHWAEEKYFQLRKIEALLSS--SSRIDDV-----------IVLGLLIQLT 621
RN+ F A A+ K L + + LSS S +I + ++LG+L+ +
Sbjct: 289 RNEAFQTSAV---ADTKRGSLARSTSSLSSQQSYKITPIANLLGRHGSHHMLLGMLVIMP 345
Query: 622 EGNITWKIQLGSVVLDMS 675
GN+ G++ LD++
Sbjct: 346 AGNLAVSDLTGTIALDVT 363
>UniRef50_A2Y0P0 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 373
Score = 41.1 bits (92), Expect = 0.025
Identities = 19/75 (25%), Positives = 38/75 (50%)
Frame = +1
Query: 283 ECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFLIDRYEI 462
+ ++ + L V+D+F +P+ YD + F + + ++ E KA DRY++
Sbjct: 83 DAASPAATSARSALRVVDSFVVPRFHYDPIKKVFYEHTSRLAIHGEAGDKAALYRDRYQV 142
Query: 463 IWQRTVRNKLFAQEA 507
+ QR R+ F++ A
Sbjct: 143 LLQRLARDIYFSKPA 157
>UniRef50_A5TUI8 Cluster: Putative uncharacterized protein; n=2;
Bacteria|Rep: Putative uncharacterized protein -
Fusobacterium nucleatum subsp. polymorphum ATCC 10953
Length = 254
Score = 40.7 bits (91), Expect = 0.034
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 214 FTHFKTMYFTARIRKEHLEIAFKECSASGLEETETVLNVIDA-FNIPKLSYDNERNKFVK 390
FT K +F + + +E +K C GLE+ + +L+V NIP + +NKF+
Sbjct: 40 FTKNKVFFFERSYKAKTIEEWYKYCLKLGLEDIQILLSVSSVNSNIPN-ELNTNKNKFI- 97
Query: 391 SVHKNN--LYPEPKWKA 435
KNN LY PKW A
Sbjct: 98 CYFKNNLVLYFTPKWNA 114
>UniRef50_A7PGG4 Cluster: Chromosome chr17 scaffold_16, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr17 scaffold_16, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 527
Score = 40.3 bits (90), Expect = 0.044
Identities = 26/111 (23%), Positives = 56/111 (50%)
Frame = +1
Query: 298 GLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFLIDRYEIIWQRT 477
G T + L ++DAF + K YD + F ++ + ++ + K+ +R+ +++QR
Sbjct: 84 GAISTRSALRIVDAFLMSKFCYDPIKKIFYENTGRLAIHGDASAKSALYRNRFLLLFQRL 143
Query: 478 VRNKLFAQEACLHWAEEKYFQLRKIEALLSSSSRIDDVIVLGLLIQLTEGN 630
R++ F++ A E +F +I + S + V+G++ QL +G+
Sbjct: 144 SRDQHFSKPA--FDTEMSHFGSCEISPIQSLIGQTGKRWVMGVISQLEDGH 192
>UniRef50_Q6C030 Cluster: DNA polymerase epsilon subunit B; n=1;
Yarrowia lipolytica|Rep: DNA polymerase epsilon subunit
B - Yarrowia lipolytica (Candida lipolytica)
Length = 652
Score = 34.3 bits (75), Expect = 2.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 328 VIDAFNIPKLSYDNERNKFVKSVHKNNLYPEPKWKAQFLIDRYEIIWQRTVRN 486
VI AF+ P Y+ + +F K K L+ + + + RY +++ R +RN
Sbjct: 143 VISAFDQPLFHYNARQQRFEKRKTKPTLFANAQSASNMFLTRYHLVYNRLLRN 195
>UniRef50_Q3JEY1 Cluster: Excinuclease ABC, A subunit; n=4;
Proteobacteria|Rep: Excinuclease ABC, A subunit -
Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Length = 1867
Score = 33.9 bits (74), Expect = 3.9
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 513 SLGRGEIFPIAQNRSAAKLF*SNR*C-DCARSFNTVDRRKYYLEDPTGQCCSRYVTNQV 686
+LG+G + + + L+ + R C C+RSF +D R + P G C Y T +V
Sbjct: 1228 NLGQGRVEILLPQKKQKILYSTQRACPSCSRSFGELDPRLFSFNSPQGWCPRCYGTGRV 1286
>UniRef50_Q47U78 Cluster: Putative uncharacterized protein; n=1;
Colwellia psychrerythraea 34H|Rep: Putative
uncharacterized protein - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 390
Score = 33.1 bits (72), Expect = 6.7
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 502 EACLHWAEEKYFQLRKIEALLSSSSRIDDVIVLGLLIQLTEGNITWKIQLGSV 660
EA LH ++KY+Q I A +S I D + G L + +G + W GSV
Sbjct: 259 EAYLHSKDDKYYQAALITAKPLTSLLIKDSFLPGRLNKDWQGTVDWSCLTGSV 311
>UniRef50_Q9AIG7 Cluster: Elongation factor G; n=2; Candidatus
Carsonella ruddii|Rep: Elongation factor G - Carsonella
ruddii
Length = 681
Score = 33.1 bits (72), Expect = 6.7
Identities = 14/33 (42%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = +1
Query: 286 CSASGLE-ETETVLNVIDAFNIPKLSYDNERNK 381
C++SG++ +TETV N + FNIPK+ + N+ ++
Sbjct: 108 CASSGIQPQTETVWNQSEKFNIPKILFVNKLDR 140
>UniRef50_Q20K05 Cluster: Putative penicillin-binding protein; n=1;
uncultured bacterium|Rep: Putative penicillin-binding
protein - uncultured bacterium
Length = 620
Score = 33.1 bits (72), Expect = 6.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 695 LEWYLVGDISRTTLPSWIFQVIFPSVNCIKRPST 594
+E YL G++ RT +W+ Q++ P+V + ST
Sbjct: 581 IEKYLTGEVKRTWYENWVLQLVKPAVTTTRTDST 614
>UniRef50_A0EA61 Cluster: Chromosome undetermined scaffold_85, whole
genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_85, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 2793
Score = 32.7 bits (71), Expect = 8.9
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Frame = +1
Query: 217 THFKTMYFTARIRKEHLEIAFKECSASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSV 396
++ K+++ ++++ ++ +++ S +E VL + D K YD +++V
Sbjct: 2213 SNVKSLFKIPILKEQTKKMFYQQSFISQIEGN--VLCMYDIKEFQKQGYDTNLYNQIENV 2270
Query: 397 HKNNLYP-EPKWKAQFLIDRYEIIWQRTVRNKLFAQEACLHWAEEKYFQLRKIEALLSSS 573
H L+P E K+ + +D I+ R K+ +QE H +E Y L + E + S
Sbjct: 2271 HYAGLFPEEKKFYSVSKLDNSITIYSMKTREKM-SQEFKDHQSEILYISLSQDEKYMISR 2329
Query: 574 SRIDDVIV 597
I+ +IV
Sbjct: 2330 D-INTIIV 2336
>UniRef50_A7TE76 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 1499
Score = 32.7 bits (71), Expect = 8.9
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 250 IRKEHLEIAFKECS--ASGLEETETVLNVIDAFNIPKLSYDNERNKFVKSVHKNN 408
I KE++++ +E LE + ID IP +S DN+ +K +++ HK+N
Sbjct: 1015 ISKENIKVLKQEKGIIVEKLESNSIIRKTIDNNRIPIVSSDNDSSKLLRAYHKDN 1069
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,166,396
Number of Sequences: 1657284
Number of extensions: 13563970
Number of successful extensions: 36013
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 34737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35994
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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