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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0103
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    37   0.55 
UniRef50_O23378 Cluster: Putative uncharacterized protein dl3665...    35   1.7  
UniRef50_Q6BU12 Cluster: Similar to sp|P22470 Saccharomyces cere...    34   2.9  
UniRef50_Q2F5U6 Cluster: Upf3 regulator of nonsense transcripts-...    33   6.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.7 bits (81), Expect = 0.55
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = +2

Query: 281 YRHSPLSFSLDILSGSRFRSGGRY 352
           +R  PLSFS D+LSGSRFR+G  Y
Sbjct: 392 HRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_O23378 Cluster: Putative uncharacterized protein dl3665c;
           n=2; Arabidopsis thaliana|Rep: Putative uncharacterized
           protein dl3665c - Arabidopsis thaliana (Mouse-ear cress)
          Length = 520

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = -3

Query: 451 PKMLFPVRPNGLVSSRFRYQNFLTLALARVVFAVSTAGSESRPTENIQRETQRAVSIG*F 272
           P+MLFP +   L SSR R   FL L    +++ + + G+  R  E I     R++S+  F
Sbjct: 22  PEMLFPAKSPSLTSSRIR-NIFLLLIFCFIIYIIFSYGTNFR-REQIS-SIARSLSV--F 76

Query: 271 ALRRNHL 251
           + RR HL
Sbjct: 77  STRRRHL 83


>UniRef50_Q6BU12 Cluster: Similar to sp|P22470 Saccharomyces
           cerevisiae YDR143c SAN1; n=1; Debaryomyces hansenii|Rep:
           Similar to sp|P22470 Saccharomyces cerevisiae YDR143c
           SAN1 - Debaryomyces hansenii (Yeast) (Torulaspora
           hansenii)
          Length = 442

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 451 PKMLFPVRPNGLVSSRFRYQNFLTLALARVVFAVSTAGSESRPTENIQRETQRAVS 284
           P + FPV    L++SRF  +N  TL  AR    +     E +  EN  +E +  VS
Sbjct: 143 PSLFFPVDEGALINSRFPSRNLSTLENARPDQILPGYAEEEKMEENQDKEKEEEVS 198


>UniRef50_Q2F5U6 Cluster: Upf3 regulator of nonsense
           transcripts-like protein B; n=1; Bombyx mori|Rep: Upf3
           regulator of nonsense transcripts-like protein B -
           Bombyx mori (Silk moth)
          Length = 499

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = -1

Query: 228 EERPKSTESESSGSDKTCFGRRRA 157
           EERPKS+E E S    TC G RRA
Sbjct: 430 EERPKSSEREGSEETDTCDGERRA 453


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,229,415
Number of Sequences: 1657284
Number of extensions: 10564993
Number of successful extensions: 22382
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22375
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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