Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0048
         (645 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q64MT0 Cluster: Putative uncharacterized protein; n=2; ...    36   0.84 
UniRef50_Q4XRS9 Cluster: Putative uncharacterized protein; n=6; ...    33   5.9  
UniRef50_Q8TIT9 Cluster: Alpha-amylase; n=5; cellular organisms|...    33   7.8  

>UniRef50_Q64MT0 Cluster: Putative uncharacterized protein; n=2;
           Bacteroides fragilis|Rep: Putative uncharacterized
           protein - Bacteroides fragilis
          Length = 83

 Score = 35.9 bits (79), Expect = 0.84
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -2

Query: 542 FKIWKKYHYQKKPHLFEERERESENTLYCK-----PTQFTLKKKIACVQFTRVRSETFKK 378
           F  WK+   +K+ +   +  RESENT+ C      P  FTL+KK        +R+ TFKK
Sbjct: 11  FVPWKQEESKKRRNTLFQEVRESENTVKCYHKDKIPRAFTLRKKPG--NLINIRNNTFKK 68


>UniRef50_Q4XRS9 Cluster: Putative uncharacterized protein; n=6;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 1726

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -2

Query: 542 FKIWKKYHYQKKPHLFEERERESENTLYCKPTQFTLKKKIACVQFTRVRSETFKKLKYN 366
           F + KK HY+   +  E   + S NT   K  +F  +K+  C+   ++ ++  K   YN
Sbjct: 282 FNLDKKNHYEHDENKKEHSRQASLNTKKFKHIKFRFRKRDYCINDDKIHADEIKYFFYN 340


>UniRef50_Q8TIT9 Cluster: Alpha-amylase; n=5; cellular
           organisms|Rep: Alpha-amylase - Methanosarcina
           acetivorans
          Length = 396

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 638 VPILFKKYIIRGLTGYLF*ATFWQLYKRTI*KFKIW 531
           +PILF+ Y +    GY F A +W+ Y  T  K+ +W
Sbjct: 191 LPILFRNYKLSDDIGYRFSARWWEGYPLTAEKWALW 226


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,293,468
Number of Sequences: 1657284
Number of extensions: 9475136
Number of successful extensions: 21436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21430
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)