Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0046
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    35   1.6  
UniRef50_Q9L7Z6 Cluster: Retron reverse transcriptase; n=1; Salm...    33   8.8  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +2

Query: 530 INLKQTKRIRPTEDTSKEKQ 589
           INLKQTK IR T DTSKEKQ
Sbjct: 44  INLKQTKGIRQTGDTSKEKQ 63



 Score = 33.9 bits (74), Expect = 3.8
 Identities = 22/46 (47%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 466 LADPADLVVPQSINKDLNFCIN-KLKTNKKNPSDGGHIKGKTNLLF 600
           LADPAD VVPQSINK         LK  K     G   K K N  F
Sbjct: 22  LADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQNCYF 67


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep:
          Like moricin - Manduca sexta (Tobacco hawkmoth)
          (Tobacco hornworm)
          Length = 248

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 16/25 (64%), Positives = 17/25 (68%)
 Frame = +1

Query: 7  EGNHSPSGGPYARLSTRAIKKKKGL 81
          +GNHSPSG PYA L TRA  K   L
Sbjct: 3  DGNHSPSGRPYASLPTRAKMKLTSL 27


>UniRef50_Q9L7Z6 Cluster: Retron reverse transcriptase; n=1;
           Salmonella enteritidis|Rep: Retron reverse transcriptase
           - Salmonella enteritidis
          Length = 379

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 511 DLNFCINKLKT-NKKNPSDGGHIKGKTNLLFLFNSEYFHIYLPFKPSLGLSTNNSLPKIS 687
           D++ C+ +L T N K P  G       NLLF FNSEY ++Y   K S+GLS +  L  I+
Sbjct: 135 DVSLCLTELVTLNNKVPQGGCCSSYIANLLF-FNSEY-NLYNRLK-SMGLSYSRLLDDIT 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,835,858
Number of Sequences: 1657284
Number of extensions: 11340931
Number of successful extensions: 22318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22288
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)