Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0016
         (649 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0F382 Cluster: Putative uncharacterized protein; n=1; ...    36   0.64 

>UniRef50_Q0F382 Cluster: Putative uncharacterized protein; n=1;
           Mariprofundus ferrooxydans PV-1|Rep: Putative
           uncharacterized protein - Mariprofundus ferrooxydans
           PV-1
          Length = 225

 Score = 36.3 bits (80), Expect = 0.64
 Identities = 22/74 (29%), Positives = 43/74 (58%)
 Frame = +2

Query: 317 IVLPWLFWSGT*MKAIKLLYRHRSLMRV*VFNFFLLILNSVKITMKHFNKYKLKPCDQIK 496
           ++LPWL W     + IK L+ HR +  +   N  L +L ++ +T+  F+ + ++P ++I 
Sbjct: 73  LLLPWLLW-----RVIKELHVHREVEPL--MNMPLTMLIALAVTL--FSFHIIQPIEKIS 123

Query: 497 TVKRRDNLAQSTKC 538
            +  RD++A +T C
Sbjct: 124 ELLTRDSMAIATAC 137


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,563,575
Number of Sequences: 1657284
Number of extensions: 7668058
Number of successful extensions: 13870
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 13514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13868
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)