Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0012
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   0.64 
UniRef50_UPI00005F745C Cluster: COG5184: Alpha-tubulin suppresso...    33   7.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.3 bits (80), Expect = 0.64
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -2

Query: 478 NRAGRWYLPARTHKTSYHQ 422
           +RA  WYLPARTHK SYH+
Sbjct: 567 SRAEWWYLPARTHKRSYHR 585


>UniRef50_UPI00005F745C Cluster: COG5184: Alpha-tubulin suppressor
           and related RCC1 domain-containing proteins; n=1;
           Yersinia bercovieri ATCC 43970|Rep: COG5184:
           Alpha-tubulin suppressor and related RCC1
           domain-containing proteins - Yersinia bercovieri ATCC
           43970
          Length = 819

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = -2

Query: 652 GRSYTSPAGLLSGLLEPHGHLHVKAPTHFEIIKILRISV*LQRLPRPSNRNALLLHGRNR 473
           G+ Y SPA L+S +    G++ V+ PT  +I   L  SV L+        +A+  +G  +
Sbjct: 306 GQVYKSPANLVSTVDVAQGYIRVQVPT-AQIDPYLGGSVDLRYAVNDDRLSAITHYGIQK 364

Query: 472 ----AGRWYLPARTHKTSYHQ 422
                  W + AR    SYHQ
Sbjct: 365 LVHVGNLWVVGARGSSASYHQ 385


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,222,308
Number of Sequences: 1657284
Number of extensions: 9964070
Number of successful extensions: 22638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22635
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)