Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0098.Seq
         (426 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006A1008 Cluster: UPI00006A1008 related cluster; n...    35   0.61 
UniRef50_A7NII6 Cluster: Ribonuclease H; n=2; Chloroflexaceae|Re...    33   3.3  
UniRef50_A5PMH0 Cluster: Ataxin 7-like 2; n=3; Danio rerio|Rep: ...    32   4.3  
UniRef50_Q1E8S5 Cluster: Putative uncharacterized protein; n=8; ...    32   4.3  
UniRef50_Q12374 Cluster: Nuclear control of ATPase protein 2; n=...    32   4.3  
UniRef50_A6RB70 Cluster: Putative uncharacterized protein; n=1; ...    32   5.7  
UniRef50_Q4RJJ1 Cluster: Chromosome 3 SCAF15037, whole genome sh...    31   9.9  
UniRef50_Q2SXX0 Cluster: Transcriptional regulator, AraC family,...    31   9.9  
UniRef50_A5GL94 Cluster: ATP adenylyltransferase; n=11; Cyanobac...    31   9.9  
UniRef50_A0GYZ1 Cluster: Sensor protein; n=2; Chloroflexus|Rep: ...    31   9.9  
UniRef50_Q9LU79 Cluster: Gb|AAF21150.1; n=2; Arabidopsis thalian...    31   9.9  

>UniRef50_UPI00006A1008 Cluster: UPI00006A1008 related cluster; n=2;
           Xenopus tropicalis|Rep: UPI00006A1008 UniRef100 entry -
           Xenopus tropicalis
          Length = 164

 Score = 35.1 bits (77), Expect = 0.61
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 308 RPARVPRPHHPQLPKPDPERPYILNKTFRKSHSNISKRSN 189
           +P R  RP  P+ P P    P ++ K+FR S    S RSN
Sbjct: 91  KPPRPRRPWRPRTPPPLYSSPSLIRKSFRSSSRRFSPRSN 130


>UniRef50_A7NII6 Cluster: Ribonuclease H; n=2; Chloroflexaceae|Rep:
           Ribonuclease H - Roseiflexus castenholzii DSM 13941
          Length = 245

 Score = 32.7 bits (71), Expect = 3.3
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +3

Query: 27  FEIEMGSGGAGWSLAHRDRPQEIS 98
           F+ E GSGG G  L HRDR +EIS
Sbjct: 104 FDSESGSGGYGVILKHRDRTKEIS 127


>UniRef50_A5PMH0 Cluster: Ataxin 7-like 2; n=3; Danio rerio|Rep:
           Ataxin 7-like 2 - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 666

 Score = 32.3 bits (70), Expect = 4.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 320 HSGTRPARVPRPHHPQLPKPDPER 249
           H G  P RVP PH P   +P P+R
Sbjct: 143 HQGAGPPRVPPPHPPHQGRPKPQR 166


>UniRef50_Q1E8S5 Cluster: Putative uncharacterized protein; n=8;
           Pezizomycotina|Rep: Putative uncharacterized protein -
           Coccidioides immitis
          Length = 321

 Score = 32.3 bits (70), Expect = 4.3
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 305 PARVPRPHHPQLPKPDPERPYILNKTFRK-SH 213
           P  VP P  P LP PDPE P I    F + SH
Sbjct: 151 PPYVPTPELPPLPSPDPETPGIGTSKFEQDSH 182


>UniRef50_Q12374 Cluster: Nuclear control of ATPase protein 2; n=2;
           Saccharomyces cerevisiae|Rep: Nuclear control of ATPase
           protein 2 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 616

 Score = 32.3 bits (70), Expect = 4.3
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = +2

Query: 137 IRSI*NRIIKMSINTERY*NVLKYCYVIFEMFYSICKD 250
           IRSI  +I  +SI T+   N+  YC V F++ Y+ICKD
Sbjct: 54  IRSIVEKIC-ISIKTD---NIDSYCSVPFDLLYNICKD 87


>UniRef50_A6RB70 Cluster: Putative uncharacterized protein; n=1;
           Ajellomyces capsulatus NAm1|Rep: Putative
           uncharacterized protein - Ajellomyces capsulatus NAm1
          Length = 391

 Score = 31.9 bits (69), Expect = 5.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 296 VPRPHHPQLPKPDPERPYILNKTFRKSHSNI 204
           VPRP  P+ P+    RPYI   T+RKS   +
Sbjct: 88  VPRPGQPRAPEQPDLRPYISPFTWRKSRKGV 118


>UniRef50_Q4RJJ1 Cluster: Chromosome 3 SCAF15037, whole genome shotgun
            sequence; n=2; Tetraodontidae|Rep: Chromosome 3
            SCAF15037, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1594

 Score = 31.1 bits (67), Expect = 9.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 284  HHPQLPKPDPERPYILNKTFRKS 216
            HHPQ  KP P+RP+ + +T   S
Sbjct: 1080 HHPQPTKPSPQRPHSIQQTHHHS 1102


>UniRef50_Q2SXX0 Cluster: Transcriptional regulator, AraC family,
           putative; n=1; Burkholderia thailandensis E264|Rep:
           Transcriptional regulator, AraC family, putative -
           Burkholderia thailandensis (strain E264 / ATCC 700388 /
           DSM 13276 /CIP 106301)
          Length = 351

 Score = 31.1 bits (67), Expect = 9.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 242 CKD-ALGQAWVAGGGEVAAPGLDAYHCVISFTANHMYVTSS 361
           C D A G AW +       PG+D+     SFTA++   T +
Sbjct: 171 CSDSAWGSAWASASAAAPIPGMDSARASASFTASYSLCTGT 211


>UniRef50_A5GL94 Cluster: ATP adenylyltransferase; n=11;
           Cyanobacteria|Rep: ATP adenylyltransferase -
           Synechococcus sp. (strain WH7803)
          Length = 303

 Score = 31.1 bits (67), Expect = 9.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 302 ARVPRPHHPQLPKPDPERPY 243
           A++PR H P+ PKP+P RP+
Sbjct: 48  AQLPRHHRPEGPKPNPFRPW 67


>UniRef50_A0GYZ1 Cluster: Sensor protein; n=2; Chloroflexus|Rep:
           Sensor protein - Chloroflexus aggregans DSM 9485
          Length = 1108

 Score = 31.1 bits (67), Expect = 9.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 21  RLFEIEMGSGGAGWSLAHR 77
           R+F + +G G AGWS+AHR
Sbjct: 185 RIFRLRVGEGIAGWSVAHR 203


>UniRef50_Q9LU79 Cluster: Gb|AAF21150.1; n=2; Arabidopsis
           thaliana|Rep: Gb|AAF21150.1 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 607

 Score = 31.1 bits (67), Expect = 9.9
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 365 THSMLRTCDLQ*N**HSGTRPARV--PRPHHPQLPKPDPERPYILNKTFRKSHSNISKRS 192
           TH  +R  DLQ N   S T+  R   P P  P  P P P +P I     RK  +   ++S
Sbjct: 270 THRSVRNRDLQENAKRSETKFKRTFQPPPSPPPPPPPPPPQPLIAATPPRKQGTLQRRKS 329

Query: 191 N 189
           N
Sbjct: 330 N 330


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 398,673,912
Number of Sequences: 1657284
Number of extensions: 7318400
Number of successful extensions: 27705
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 25528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27633
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20232460752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)