Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0090.Seq
         (460 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp. ...    67   2e-10
UniRef50_A0ZLG1 Cluster: Beta-D-galactosidase; n=1; Nodularia sp...    33   3.0  
UniRef50_A0D095 Cluster: Chromosome undetermined scaffold_33, wh...    33   3.9  
UniRef50_Q1IW01 Cluster: Putative uncharacterized protein; n=1; ...    32   5.2  
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L...    32   6.8  
UniRef50_Q5CYC7 Cluster: Uncharacterized protein with predicted ...    32   6.8  
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet...    32   6.8  
UniRef50_UPI00015547F1 Cluster: PREDICTED: similar to IA-1; n=1;...    31   9.0  
UniRef50_Q4P0G6 Cluster: Pre-mRNA-splicing factor CWC21; n=1; Us...    31   9.0  

>UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp.
           SS|Rep: LacZ alpha peptide - Beggiatoa sp. SS
          Length = 73

 Score = 66.9 bits (156), Expect = 2e-10
 Identities = 36/59 (61%), Positives = 36/59 (61%)
 Frame = -3

Query: 458 VVTRSVXXXXXXXXXXXXXXXXXXXXXXXAGFPRQALNRGLPLGFRFSALRHLDPKKLD 282
           VVTRSV                       AGFPRQALNRGLPLGFRFSALRHLDPKKLD
Sbjct: 15  VVTRSVTATLASALAPAPFAFFPSFLATFAGFPRQALNRGLPLGFRFSALRHLDPKKLD 73


>UniRef50_A0ZLG1 Cluster: Beta-D-galactosidase; n=1; Nodularia
           spumigena CCY 9414|Rep: Beta-D-galactosidase - Nodularia
           spumigena CCY 9414
          Length = 72

 Score = 33.1 bits (72), Expect = 3.0
 Identities = 12/16 (75%), Positives = 16/16 (100%)
 Frame = +2

Query: 2   RPSQQLRTLNGEWQIV 49
           RPSQQLR+LNGEW+++
Sbjct: 57  RPSQQLRSLNGEWRLM 72


>UniRef50_A0D095 Cluster: Chromosome undetermined scaffold_33, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_33,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1173

 Score = 32.7 bits (71), Expect = 3.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 156 VYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLTI 43
           +++F L G L    +WLKN+    KF++ F ++L L +
Sbjct: 665 IFNFSLQGALSYIDFWLKNQHFDDKFSSTFTQLLLLAL 702


>UniRef50_Q1IW01 Cluster: Putative uncharacterized protein; n=1;
           Deinococcus geothermalis DSM 11300|Rep: Putative
           uncharacterized protein - Deinococcus geothermalis
           (strain DSM 11300)
          Length = 171

 Score = 32.3 bits (70), Expect = 5.2
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 169 ECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGSRCRKA 315
           E  SS    S +++R +QR+       G  PL +PS  S  LG  CR+A
Sbjct: 32  EVLSSHSHSSGLQDRPVQRRSESPSRDGLLPLNKPSRESRLLGRACRQA 80


>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
           protein - Phage M13mp18
          Length = 102

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +2

Query: 2   RPSQQLRTLNGEWQ 43
           RPSQQLR+LNGEW+
Sbjct: 65  RPSQQLRSLNGEWR 78


>UniRef50_Q5CYC7 Cluster: Uncharacterized protein with predicted
           coiled coil regions; n=2; Cryptosporidium|Rep:
           Uncharacterized protein with predicted coiled coil
           regions - Cryptosporidium parvum Iowa II
          Length = 825

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 154 DRDRVECCSSLEQESTIKERGLQRQRAKNRL 246
           +RD V  C S+ Q+S IKER L+ ++ K +L
Sbjct: 128 ERDNVSKCLSIRQQSLIKERELRLEKTKLKL 158


>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
          Beta-galactosidase - Escherichia coli (strain K12)
          Length = 1024

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +2

Query: 2  RPSQQLRTLNGEWQ 43
          RPSQQLR+LNGEW+
Sbjct: 47 RPSQQLRSLNGEWR 60


>UniRef50_UPI00015547F1 Cluster: PREDICTED: similar to IA-1; n=1;
           Ornithorhynchus anatinus|Rep: PREDICTED: similar to IA-1
           - Ornithorhynchus anatinus
          Length = 225

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 441 DRYTCQRPSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVPI 319
           +R  C R   +SF+  PFLSRHV    PS  +     +VP+
Sbjct: 170 ERRFCFRFPPKSFKSSPFLSRHVDSCHPSDGRRLLLLQVPM 210


>UniRef50_Q4P0G6 Cluster: Pre-mRNA-splicing factor CWC21; n=1;
           Ustilago maydis|Rep: Pre-mRNA-splicing factor CWC21 -
           Ustilago maydis (Smut fungus)
          Length = 348

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +1

Query: 157 RDRVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGSRCRKALNRNPKG 336
           R R     S    S  + R   R R+++ LS     R  SP  S   SRC  + +R+P  
Sbjct: 266 RSRSPLSHSRSSRSRSRSRSRSRSRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSRSPAH 325

Query: 337 SPR 345
            PR
Sbjct: 326 RPR 328


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 415,200,018
Number of Sequences: 1657284
Number of extensions: 8190213
Number of successful extensions: 16953
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16946
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)