Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H01f
         (338 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q51870 Cluster: Polyhydroxyalkanoate depolymerase precu...    34   0.72 
UniRef50_Q4X3E7 Cluster: Putative uncharacterized protein; n=1; ...    33   1.7  
UniRef50_A2EC30 Cluster: PIKK family atypical protein kinase; n=...    30   8.8  
UniRef50_A0CGG2 Cluster: Chromosome undetermined scaffold_18, wh...    30   8.8  

>UniRef50_Q51870 Cluster: Polyhydroxyalkanoate depolymerase
           precursor; n=2; Paucimonas lemoignei|Rep:
           Polyhydroxyalkanoate depolymerase precursor -
           Pseudomonas lemoignei
          Length = 567

 Score = 33.9 bits (74), Expect = 0.72
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -2

Query: 283 YVSY*TQFFFRSNLKLNFWKI 221
           Y +Y TQFFF +NL++N WKI
Sbjct: 317 YPAYVTQFFFENNLRVNKWKI 337


>UniRef50_Q4X3E7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 98

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = +2

Query: 119 INFMLSIPNVFLFSYLCA*CE----FFNVLDGV-KV*VFDFPKI*LQIRTKKKLCLVRNV 283
           IN++  + N+ +F ++ A       F  +L  +  + +F FP    ++ T  ++C +  V
Sbjct: 6   INYITILRNIIIFYFILALLFLHYIFLRILSCICLLLIFRFPSFIPKVTTFLRICFLLLV 65

Query: 284 LFIYFLKCSFXIFFLLFY 337
           LFI+     F  FF +F+
Sbjct: 66  LFIFLSYTYFFFFFSIFF 83


>UniRef50_A2EC30 Cluster: PIKK family atypical protein kinase; n=1;
            Trichomonas vaginalis G3|Rep: PIKK family atypical
            protein kinase - Trichomonas vaginalis G3
          Length = 2176

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 71   LRN*KISETVGVLVGTINFMLSIPN-VFLFSYL 166
            LRN  I E+  VL+ ++ F+ S PN  F+FSYL
Sbjct: 1064 LRNYFIMESPNVLIRSMQFLPSYPNFAFMFSYL 1096


>UniRef50_A0CGG2 Cluster: Chromosome undetermined scaffold_18, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_18,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 178

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 239 LQIRTKKKLCLVRNVLFIYFLKCSFXIFFLLFY 337
           +Q RT  +L    + LFI  +KC+F +  LLF+
Sbjct: 43  MQTRTSNRLLTPISALFIQDIKCTFNVSLLLFW 75


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 285,070,546
Number of Sequences: 1657284
Number of extensions: 4923699
Number of successful extensions: 10743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10739
length of database: 575,637,011
effective HSP length: 88
effective length of database: 429,796,019
effective search space used: 10315104456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)