Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0149.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2UUZ2 Cluster: Uncharacterized conserved protein; n=6;...    32   7.6  

>UniRef50_Q2UUZ2 Cluster: Uncharacterized conserved protein; n=6;
           Trichocomaceae|Rep: Uncharacterized conserved protein -
           Aspergillus oryzae
          Length = 452

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -1

Query: 440 YSFTVEVNR*PFIKYVFYCKNWYIGTWQDTNAPSSSYXLGHDDVYNFDISISNNTMILKK 261
           YS  +++NR P  + +  C     GTWQD+ A SS       +V  F  ++S N ++ + 
Sbjct: 43  YSTMLDINRCPSKRLIVCCD----GTWQDSTADSSK---PASNVTRFSRALSANAVVERN 95

Query: 260 TESHFI 243
            + H I
Sbjct: 96  GQKHEI 101


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,800,746
Number of Sequences: 1657284
Number of extensions: 11096248
Number of successful extensions: 30328
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 29300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30322
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)