Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30111
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0TTW1 Cluster: Putative polysaccharide transporter pro...    34   4.0  
UniRef50_A0CBS1 Cluster: Chromosome undetermined scaffold_165, w...    33   5.3  
UniRef50_UPI0000499A8D Cluster: importin beta; n=1; Entamoeba hi...    33   7.0  

>UniRef50_Q0TTW1 Cluster: Putative polysaccharide transporter
           protein; n=1; Clostridium perfringens ATCC 13124|Rep:
           Putative polysaccharide transporter protein -
           Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
           Type A)
          Length = 488

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = -3

Query: 465 LLHYYVAKRLCTFQAKYKLD--KYYTINLN*LKQLNHFRKLTYNNSNIIMEL 316
           +L   V+KR C F+     +  K+Y I++  +  L++F  LTYNN+N++MEL
Sbjct: 398 ILFKIVSKRCCEFRYNLNKNIVKFYVISI--ILYLSYFI-LTYNNTNLLMEL 446


>UniRef50_A0CBS1 Cluster: Chromosome undetermined scaffold_165, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_165, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1857

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -3

Query: 531  CISIYT*TTLEHNIM--MKCF*DKLLHYYVAKRLCTFQAKYKLDKYYTINLN*LKQLNHF 358
            C   Y     EH ++  ++CF  KL++ + A      Q +Y L K      N  + L H+
Sbjct: 877  CNKFYFIPFFEHEVIAGVECFAGKLINLFSAMTSKNIQTEYMLIKLP----NQQQILRHY 932

Query: 357  RKLTYNNSNIIMELAKPRV 301
              LTYN   +I E  K RV
Sbjct: 933  FDLTYNTIELIQERLKFRV 951


>UniRef50_UPI0000499A8D Cluster: importin beta; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: importin beta - Entamoeba
           histolytica HM-1:IMSS
          Length = 843

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 453 YVAKRLCTFQAKYKLDKYYTINLN*LKQL-NHFRKLTYNNSNIIMEL 316
           Y++K L  F      +  Y I LN +K L NH+R  ++NN +++ ++
Sbjct: 166 YLSKILPRFVTDINNEHLYEIRLNGIKNLLNHYRSFSFNNFDVLFDI 212


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,099,893
Number of Sequences: 1657284
Number of extensions: 12262867
Number of successful extensions: 29689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29683
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)