Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30021
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4N2F8 Cluster: Putative uncharacterized protein; n=2; ...    34   2.6  
UniRef50_Q1NYL0 Cluster: Aspartokinase; n=1; Candidatus Sulcia m...    34   3.4  
UniRef50_Q0SUI0 Cluster: Ribose operon repressor, putative; n=1;...    33   5.9  
UniRef50_O51157 Cluster: Transcription elongation factor greA; n...    33   5.9  

>UniRef50_Q4N2F8 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 178

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -3

Query: 381 HTKHVFFPVILKLFGFYCNIINNL*FLWENRLFKIHSLNILN-IFAYFFGSYISSYTNDR 205
           HT  +++P+I K F F  +I +N     +   F   S  +LN +   F+ ++IS+YTN R
Sbjct: 117 HTADLYYPIIYKPFWFKGDINSNGFQTVDETTFLTKSKQLLNTLDKPFYDNFISTYTNTR 176


>UniRef50_Q1NYL0 Cluster: Aspartokinase; n=1; Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)|Rep:
           Aspartokinase - Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)
          Length = 415

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 32  LGVF*VYSNLYRQTNSKYKYINREFAVWKRILEINNTK 145
           +G+  V SNL  Q N + KY+N+EF +  R++ + N+K
Sbjct: 347 IGLGKVGSNLLGQINQQKKYLNKEFKIQLRVIGLANSK 384


>UniRef50_Q0SUI0 Cluster: Ribose operon repressor, putative; n=1;
           Clostridium perfringens SM101|Rep: Ribose operon
           repressor, putative - Clostridium perfringens (strain
           SM101 / Type A)
          Length = 339

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = +3

Query: 129 KLIIQNDCNLYIKINI*LYRKIKNVACRLYTRIY----NCQRNKQRYLIYLTNV 278
           KL+I+N+C++ I IN     KI N     Y RI      CQRN Q + IY++N+
Sbjct: 167 KLLIENNCDILIHIN----GKI-NGNTPAYKRIEAFKETCQRNNQDFKIYMSNI 215


>UniRef50_O51157 Cluster: Transcription elongation factor greA; n=4;
           Borrelia|Rep: Transcription elongation factor greA -
           Borrelia burgdorferi (Lyme disease spirochete)
          Length = 901

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +3

Query: 3   IKYCKNFKFGWAYSKSTLICTVKQILNTSILIENSQYGNVFWKLIIQNDCNLYIK 167
           +K+CK +    +YS S L+  + +IL  S++  N++  +V  K I +   NL +K
Sbjct: 624 LKHCKAYSIELSYSDSDLLSNLIKILTDSVIKINNKNNSVASKRIYKMVINLLVK 678


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,494,444
Number of Sequences: 1657284
Number of extensions: 10405298
Number of successful extensions: 21605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21595
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)