Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00084X
         (535 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7PUU7 Cluster: ENSANGP00000004146; n=2; Culicidae|Rep:...    46   5e-04
UniRef50_P47171 Cluster: Histone transcription regulator 3; n=3;...    33   5.4  
UniRef50_Q22Y43 Cluster: Putative uncharacterized protein; n=1; ...    32   7.2  
UniRef50_Q6FK87 Cluster: Histone transcription regulator 3 homol...    32   9.5  

>UniRef50_Q7PUU7 Cluster: ENSANGP00000004146; n=2; Culicidae|Rep:
           ENSANGP00000004146 - Anopheles gambiae str. PEST
          Length = 617

 Score = 46.0 bits (104), Expect = 5e-04
 Identities = 20/53 (37%), Positives = 33/53 (62%)
 Frame = +1

Query: 208 TTSLQKCRR*VQKYPNKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPALKDLER 366
           T + +K  +   +  NKL +IV+ TGG+ ++ G  FTAYQ+LG  P L+ + +
Sbjct: 25  TAAYEKAEKEHHEVRNKLKEIVQETGGKNIFAGQVFTAYQVLGPVPGLEQISK 77


>UniRef50_P47171 Cluster: Histone transcription regulator 3; n=3;
            Saccharomycetaceae|Rep: Histone transcription regulator 3
            - Saccharomyces cerevisiae (Baker's yeast)
          Length = 1648

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 238  VQKYPNKLDDIVKSTGGQIVYNGDQFTAYQLLGK 339
            +Q  P++LD I++     I+YN ++F ++ LLGK
Sbjct: 1102 MQARPSELDSIIRMLKNDIIYNTNRFESWILLGK 1135


>UniRef50_Q22Y43 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1476

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 129 STRDRISVRTYQH*S*NAGKKNYQKSNYKLTKMPT 233
           +T D + ++T Q    N GKK YQK N K T+ PT
Sbjct: 529 ATTDNMQIQTSQQ---NTGKKKYQKKNAKNTENPT 560


>UniRef50_Q6FK87 Cluster: Histone transcription regulator 3 homolog;
            n=1; Candida glabrata|Rep: Histone transcription
            regulator 3 homolog - Candida glabrata (Yeast)
            (Torulopsis glabrata)
          Length = 1615

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 229  RR*VQKYPNKLDDIVKSTGGQIVYNGDQFTAYQLLGK 339
            +R VQ  P++LD I+      I+YN  +F ++ LLGK
Sbjct: 1082 KRSVQARPSELDAIITMFKNDILYNTKRFESWYLLGK 1118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,962,123
Number of Sequences: 1657284
Number of extensions: 8375503
Number of successful extensions: 18546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18543
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)