Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00055
(693 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 122 6e-27
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 118 1e-25
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 107 3e-22
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 97 5e-19
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 93 6e-18
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 93 8e-18
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 92 1e-17
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 91 3e-17
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 89 7e-17
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 89 1e-16
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 88 2e-16
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 87 4e-16
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 85 1e-15
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 82 1e-14
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 78 2e-13
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 77 5e-13
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 75 2e-12
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 66 8e-10
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 64 2e-09
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 62 9e-09
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 60 4e-08
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 53 8e-06
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 52 1e-05
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 46 0.001
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 44 0.003
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 43 0.006
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 43 0.008
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 42 0.014
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 40 0.044
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 40 0.058
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 40 0.076
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 38 0.23
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 37 0.41
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 36 0.94
UniRef50_Q5NB71 Cluster: Putative uncharacterized protein P0431F... 36 1.2
UniRef50_Q6ZR89 Cluster: CDNA FLJ46551 fis, clone THYMU3038687; ... 35 2.2
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 34 2.9
UniRef50_Q9VJJ9 Cluster: CG31738-PB, isoform B; n=3; Drosophila ... 34 3.8
UniRef50_A1FG00 Cluster: Putative uncharacterized protein; n=1; ... 33 5.0
UniRef50_UPI0000F2E6E2 Cluster: PREDICTED: hypothetical protein;... 33 8.8
UniRef50_UPI0000F212F9 Cluster: PREDICTED: hypothetical protein;... 33 8.8
UniRef50_A5UPY3 Cluster: HAD-superfamily hydrolase, subfamily IA... 33 8.8
UniRef50_A0GGU8 Cluster: Putative uncharacterized protein; n=1; ... 33 8.8
UniRef50_Q653W4 Cluster: Non-specific lipid-transfer protein; n=... 33 8.8
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 122 bits (295), Expect = 6e-27
Identities = 66/150 (44%), Positives = 80/150 (53%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLISLRCTSLS 602
++GH IE++PELPLVV +K + + + +
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187
Query: 603 VFVLVRVKCATVRRIQRKGPLIIFNKDQGL 692
+ K RRIQR+GP II+N+D G+
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGI 217
Score = 104 bits (249), Expect = 2e-21
Identities = 49/72 (68%), Positives = 58/72 (80%)
Frame = +1
Query: 40 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 219
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 220 HQTSAESWGTGR 255
HQTSAESWGTGR
Sbjct: 60 HQTSAESWGTGR 71
Score = 68.1 bits (159), Expect = 2e-10
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 509 KVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
KV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGKGKMRNR
Sbjct: 157 KVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNR 199
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 118 bits (284), Expect = 1e-25
Identities = 62/150 (41%), Positives = 83/150 (55%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH
Sbjct: 71 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSA 130
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLISLRCTSLS 602
Q++GH+I+ + E PLVV+++ ++ + + + +
Sbjct: 131 IAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQ 190
Query: 603 VFVLVRVKCATVRRIQRKGPLIIFNKDQGL 692
F R RRI R+GPL++++KD+GL
Sbjct: 191 RFRAGRGTMRDRRRIARRGPLVVYDKDEGL 220
Score = 102 bits (244), Expect = 1e-20
Identities = 49/74 (66%), Positives = 58/74 (78%)
Frame = +1
Query: 34 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 213
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSEL 60
Query: 214 AGHQTSAESWGTGR 255
AGHQTSAESWGTGR
Sbjct: 61 AGHQTSAESWGTGR 74
Score = 72.1 bits (169), Expect = 1e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +2
Query: 503 SRKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
S +VQ++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+R
Sbjct: 158 SDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDR 202
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 107 bits (257), Expect = 3e-22
Identities = 58/151 (38%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AVARIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 44 GTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFATASA 103
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLISLRCTSLS 602
ARGH + +PE+PLV++ + + S++ + C
Sbjct: 104 LAASGSPALLMARGHNVSTVPEVPLVISSTAFADAAIRKTSAAVALLKAVGAGADCEKAK 163
Query: 603 VFVLVRV---KCATVRRIQRKGPLIIFNKDQ 686
+R K R QR+GPL+I+N D+
Sbjct: 164 NSRKLRAGKGKLRGRRHKQRRGPLVIYNPDE 194
Score = 37.9 bits (84), Expect = 0.23
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 178 KNSRQPYCVSKEAGHQTSAESWGTGR 255
++++ V +AGHQTSAESWGTGR
Sbjct: 22 ESTKDTLTVPNKAGHQTSAESWGTGR 47
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 96.7 bits (230), Expect = 5e-19
Identities = 55/148 (37%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AVARIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 67 GTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLGQKRFATVSA 126
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRH-GLIS--LRCT 593
ARGH I ++ E+PLV+ + + R +++ G + G + +
Sbjct: 127 LAASGVPALLFARGHQISEVAEVPLVINSEVFEGAKIARTAAAAGLLKTVGALKDVEKVK 186
Query: 594 SLSVFVLVRVKCATVRRIQRKGPLIIFN 677
+ K R QR+GPL++++
Sbjct: 187 DSRKLRAGKGKLRGRRHRQRRGPLVVYD 214
Score = 93.1 bits (221), Expect = 6e-18
Identities = 44/69 (63%), Positives = 50/69 (72%)
Frame = +1
Query: 49 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 228
+RP VSV S T G PLP VF +PIRPD+V VH M+KN RQPY VS++AGHQT
Sbjct: 3 SRPTVSVLSADG-TATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQT 61
Query: 229 SAESWGTGR 255
SAESWGTGR
Sbjct: 62 SAESWGTGR 70
Score = 36.3 bits (80), Expect = 0.71
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2
Query: 518 EINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
+I +T A L+ + A D+ KV S++LRAGKGK+R R
Sbjct: 162 KIARTAAAAGLLKTVGALKDVEKVKDSRKLRAGKGKLRGR 201
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 93.1 bits (221), Expect = 6e-18
Identities = 55/152 (36%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AVARIPRV GT RSGQGAFGNMCRGG MF+P K +RR+H
Sbjct: 69 GTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFSPNKTYRRFHRKINTTEKRHAVAAA 128
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLIS--LRCTS 596
ARGH I +PELPLV++ + + + + GL R S
Sbjct: 129 IAATGCPSLVMARGHRINNVPELPLVISNEIQNINKTSTAVEFFKNFGKGLEEEMKRIES 188
Query: 597 LSVFVLVRVKCATVRRIQRKGPLIIFNKDQGL 692
+ K RR+ GPL+++ +D G+
Sbjct: 189 SIAIRCGKGKMRNRRRVCAVGPLVVYAEDNGI 220
Score = 83.4 bits (197), Expect = 5e-15
Identities = 40/72 (55%), Positives = 50/72 (69%)
Frame = +1
Query: 40 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 219
++ ARP+VSV+ T ++ PLP VF +P+R DLV V +MSKN RQ Y VS +AG
Sbjct: 1 MTFARPIVSVFPSNDSTKATSSIPLPTVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAG 60
Query: 220 HQTSAESWGTGR 255
HQ SAESWGTGR
Sbjct: 61 HQHSAESWGTGR 72
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 92.7 bits (220), Expect = 8e-18
Identities = 54/149 (36%), Positives = 70/149 (46%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AVARIPR+ GGGT SG GAFGNMCRGGRMFAPTK +RRWH
Sbjct: 67 GTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSA 126
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLISLRCTSLS 602
+RGH I +PE+PLVV + + + + A R
Sbjct: 127 LAASSVPSLVMSRGHQIGNVPEVPLVVEDSIQGYEKTKEAMAFLKAIAAIDDVNRVNDSR 186
Query: 603 VFVLVRVKCATVRRIQRKGPLIIFNKDQG 689
R K R + R+GP+++ ++G
Sbjct: 187 EIRAGRGKMRNRRYVARRGPMLVMPNNKG 215
Score = 82.6 bits (195), Expect = 8e-15
Identities = 41/69 (59%), Positives = 49/69 (71%)
Frame = +1
Query: 49 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 228
ARP VSVYS S++V G PLP VF APIR D+V VH +M+KNSRQ Y V++ +G
Sbjct: 3 ARPSVSVYSASSDSVVGTC-PLPAVFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNH 61
Query: 229 SAESWGTGR 255
SA SWGTGR
Sbjct: 62 SAHSWGTGR 70
Score = 46.0 bits (104), Expect = 9e-04
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +2
Query: 512 VQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
+Q KTK+A+ FL+ + A D+ +V S+ +RAG+GKMRNR
Sbjct: 157 IQGYEKTKEAMAFLKAIAAIDDVNRVNDSREIRAGRGKMRNR 198
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 91.9 bits (218), Expect = 1e-17
Identities = 40/45 (88%), Positives = 41/45 (91%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 377
G AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH
Sbjct: 185 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWH 229
Score = 85.4 bits (202), Expect = 1e-15
Identities = 40/63 (63%), Positives = 48/63 (76%)
Frame = +1
Query: 67 VYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG 246
VY++KSE + LP VF+AP+RPD+V+ VH + KN RQPY VS EAGHQTSAESWG
Sbjct: 127 VYNDKSEPTDTQIR-LPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESWG 185
Query: 247 TGR 255
TGR
Sbjct: 186 TGR 188
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 90.6 bits (215), Expect = 3e-17
Identities = 44/90 (48%), Positives = 49/90 (54%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AVARIPRV G GTHRSGQ AFGN CR GRM P K WRRWH
Sbjct: 69 GTGRAVARIPRVSGSGTHRSGQAAFGNQCRKGRMSLPIKVWRRWHRRVNIKQKRHAAATA 128
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEK 512
ARGH I ++P++PLVV +K
Sbjct: 129 VAATGIVPLVLARGHRISQVPQIPLVVEDK 158
Score = 77.4 bits (182), Expect = 3e-13
Identities = 38/68 (55%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Frame = +1
Query: 55 PLVSVYSEKSET-VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 231
PLVSV+S T V PLP VF+ PIRPD+V+ VH +++KN RQ + V+ +AG Q S
Sbjct: 5 PLVSVFSADDSTKVTAKHIPLPAVFQTPIRPDIVSFVHTNIAKNRRQAHAVNPQAGMQHS 64
Query: 232 AESWGTGR 255
AESWGTGR
Sbjct: 65 AESWGTGR 72
Score = 35.9 bits (79), Expect = 0.94
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 509 KVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
K++ KT A+ FL+R A+ D+ KV ++ +RAG K R +
Sbjct: 158 KIESYEKTTDALNFLKRFGAFEDVQKVVSTKVVRAGISKQRGK 200
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 89.4 bits (212), Expect = 7e-17
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = +2
Query: 503 SRKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
S K+QEINKTKQAVIFLRR+KAWSD+LKVYKSQRLRAGKGKMRNR
Sbjct: 20 SDKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 64
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +3
Query: 459 RGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLISLRCTSLSVFVLVRVKCATV 638
RG++++ + E+PLVV++K + + + + L+ + K
Sbjct: 5 RGYVVDNVSEIPLVVSDKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 64
Query: 639 RRIQRKGPLIIFNKDQGL 692
RR+ RKGPLII+NKDQGL
Sbjct: 65 RRLHRKGPLIIYNKDQGL 82
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 89.0 bits (211), Expect = 1e-16
Identities = 40/96 (41%), Positives = 51/96 (53%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G A++R PRV+GGGTHRSGQ A+ N CR G MFAPT+ WR WH
Sbjct: 67 GTGRALSRTPRVKGGGTHRSGQAAYANFCRAGGMFAPTRTWRHWHRKINLKEKRLALAVS 126
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTR 530
+RGH +E +PELPLV+ + T+
Sbjct: 127 VAATASVPLVMSRGHRVESVPELPLVLDDTMETLTK 162
Score = 79.8 bits (188), Expect = 6e-14
Identities = 38/70 (54%), Positives = 50/70 (71%)
Frame = +1
Query: 46 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 225
V RP+VSV+S +E G+ +P VF P+R DLV+ VH +MSKN RQ Y +S+ +G+Q
Sbjct: 2 VHRPVVSVFSVSTEKRMGSTI-MPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISRMSGYQ 60
Query: 226 TSAESWGTGR 255
TSA SWGTGR
Sbjct: 61 TSARSWGTGR 70
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 88.2 bits (209), Expect = 2e-16
Identities = 58/155 (37%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AVARIPRV GGGTHR+GQ AFGNMCRGG MF PTK WRRW
Sbjct: 68 GTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIWRRWGRKINLKEKRYAVCSS 127
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAE--KSRRSTRPNRLSSS*GASRHGLISLRCTS 596
ARGH I + E+PLV + +S + T+ + L ++ S
Sbjct: 128 IAASGITSLVLARGHRISNLKEVPLVASNDIESMQKTK-DALKFLISLGLRDEVNRLIKS 186
Query: 597 LSVFVLVRVKCATVRRIQRK---GPLIIFNKDQGL 692
+R + +R + K GPLII++ D G+
Sbjct: 187 XK----LRARXGKMRNRKYKISNGPLIIYSXDSGI 217
Score = 74.1 bits (174), Expect = 3e-12
Identities = 35/72 (48%), Positives = 47/72 (65%)
Frame = +1
Query: 40 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 219
++ RPL +VY + V G + +P VF+ PIR DL+ + +MSKN R PY V AG
Sbjct: 1 MATIRPLANVYGINGKKVVGEVE-IPVVFQTPIRHDLIEYIFSNMSKNIRHPYAVKLGAG 59
Query: 220 HQTSAESWGTGR 255
++TSAESWGTGR
Sbjct: 60 YETSAESWGTGR 71
Score = 38.7 bits (86), Expect = 0.13
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2
Query: 503 SRKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
S ++ + KTK A+ FL L ++ ++ KS +LRA GKMRNR
Sbjct: 155 SNDIESMQKTKDALKFLISLGLRDEVNRLIKSXKLRARXGKMRNR 199
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 87.0 bits (206), Expect = 4e-16
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AVAR+PR+ G GT R+GQ AF N RGG M++P K WRRWH
Sbjct: 68 GTGRAVARVPRISGSGTSRNGQAAFANSARGGHMYSPLKVWRRWHRMVNVTQRRFAMCSA 127
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVA---EKSRRSTRPNRLSSS*GASRHGLISLRCT 593
ARGH I+ +PELPLVV+ E+ +++ ++ ++ AS S
Sbjct: 128 IAASSNPSLVLARGHKIDNVPELPLVVSDDVEQIKKTKEAVKVLAALKASDDVKHSAESK 187
Query: 594 SLSVFVLVRVKCATVRRIQRKGPLIIFNKDQGL 692
+ V K R QR+G LI+ ++++GL
Sbjct: 188 RIRV---GSGKARNRRYTQRRGVLIVHDQNEGL 217
Score = 62.1 bits (144), Expect = 1e-08
Identities = 31/66 (46%), Positives = 43/66 (65%)
Frame = +1
Query: 58 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 237
L +VY+ + A P + +PIRPD+V+ VH++++KN RQP+ AGHQ SAE
Sbjct: 7 LTTVYNTDGKARDTTAVPSVIRY-SPIRPDVVHFVHMNLAKNERQPFGRYYLAGHQHSAE 65
Query: 238 SWGTGR 255
SWGTGR
Sbjct: 66 SWGTGR 71
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 85.4 bits (202), Expect = 1e-15
Identities = 38/87 (43%), Positives = 49/87 (56%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G A+AR+PRV+GGGTHR+GQ A+ N CR G M+APT+ WRRWH
Sbjct: 67 GTGRAMARVPRVKGGGTHRAGQAAYANFCRAGGMYAPTRVWRRWHRKVNLKEKRQALASA 126
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVV 503
+RGH IE + E+P+VV
Sbjct: 127 LAATAVVPVVMSRGHRIEALREVPMVV 153
Score = 74.9 bits (176), Expect = 2e-12
Identities = 39/68 (57%), Positives = 46/68 (67%)
Frame = +1
Query: 52 RPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 231
RP VSV++ GA +P VF AP+R DLV VH +MSKN RQ Y VSK +G+QTS
Sbjct: 4 RPEVSVHNATDGERVGATL-MPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSKMSGYQTS 62
Query: 232 AESWGTGR 255
A SWGTGR
Sbjct: 63 ARSWGTGR 70
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 82.2 bits (194), Expect = 1e-14
Identities = 37/89 (41%), Positives = 48/89 (53%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AV+R+PRV G GTHRSGQGA N CRGGR+F PT WR+WH
Sbjct: 63 GTGRAVSRVPRVPGSGTHRSGQGAIANFCRGGRIFNPTTIWRKWHHKINKNQRKSAIFSA 122
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAE 509
+RG+ ++ IPE+P V+ +
Sbjct: 123 IASSSIVSIIVSRGYRVKTIPEIPFVIED 151
Score = 56.8 bits (131), Expect = 5e-07
Identities = 28/48 (58%), Positives = 32/48 (66%)
Frame = +1
Query: 112 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 255
+P VF + IR D+V VH +M KN RQ Y VS AG TSA SWGTGR
Sbjct: 19 IPKVFFSKIRVDIVRFVHKNMCKNKRQVYAVSSTAGMGTSAVSWGTGR 66
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 77.8 bits (183), Expect = 2e-13
Identities = 49/148 (33%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AVARIPR+ G G+ R+GQGAFGNM R G MF+P K +R+W
Sbjct: 68 GTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASC 127
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLISLRCTSLS 602
ARGH I +P++PLVV KS + + + + + S
Sbjct: 128 IAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIAS 187
Query: 603 VFVLVRVKCATVRRI-QRKGPLIIFNKD 683
V R+I +RKGPL+++ D
Sbjct: 188 KTVRAGQGKMRGRKIKERKGPLVVYGND 215
Score = 66.1 bits (154), Expect = 8e-10
Identities = 34/69 (49%), Positives = 45/69 (65%)
Frame = +1
Query: 49 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 228
+RP V++Y + + LP VF APIR D+V+ V+ + SKN+RQP VS +AG Q
Sbjct: 3 SRPFVTIYDGITGEAEKTQVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTKAGKQH 62
Query: 229 SAESWGTGR 255
SA SWGTGR
Sbjct: 63 SAISWGTGR 71
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +2
Query: 503 SRKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
S+ + I KTKQAV L+++ A+SD+LKV S+ +RAG+GKMR R
Sbjct: 156 SKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGR 200
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 76.6 bits (180), Expect = 5e-13
Identities = 37/89 (41%), Positives = 47/89 (52%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G A+AR+PRV+GGGT R+GQGAF N CR GRM PTK RRW
Sbjct: 65 GTGRAIARVPRVKGGGTRRAGQGAFANFCRKGRMAHPTKTHRRWARKVVENTKKIAEAMA 124
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAE 509
+ARGH I + LP++V++
Sbjct: 125 VAASAQASLVEARGHRISDVKMLPIIVSD 153
Score = 59.7 bits (138), Expect = 7e-08
Identities = 32/65 (49%), Positives = 37/65 (56%)
Frame = +1
Query: 61 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 240
++ Y TV+ LP VF PIR DLV + +RQPY VSK AG Q SAES
Sbjct: 5 INCYEADGVTVKKTLD-LPEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAES 63
Query: 241 WGTGR 255
WGTGR
Sbjct: 64 WGTGR 68
Score = 42.7 bits (96), Expect = 0.008
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = +2
Query: 503 SRKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
S + + KTK AV LR L ++ +V KS+ +R GKGKMRNR
Sbjct: 152 SDDIAKARKTKDAVEILRNLNMTEELKRVEKSRGVRCGKGKMRNR 196
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 74.9 bits (176), Expect = 2e-12
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 1/151 (0%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G A A +PRV G G++R+GQGA+ N CRGG F P RRW
Sbjct: 65 GTGRAKACVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIASA 124
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRP-NRLSSS*GASRHGLISLRCTSL 599
QARGH++ ++ E+P+VV + + R + + +G + R
Sbjct: 125 IAATAVVPLVQARGHVLGEVKEVPIVVVDAVQEIKRTRDAVELLKKVGVYGDVQ-RVLDG 183
Query: 600 SVFVLVRVKCATVRRIQRKGPLIIFNKDQGL 692
SV + K +KGPL+I+N+D+G+
Sbjct: 184 SVHRSSKGKFRRAAYKTKKGPLVIYNEDKGI 214
Score = 57.2 bits (132), Expect = 4e-07
Identities = 27/70 (38%), Positives = 47/70 (67%)
Frame = +1
Query: 46 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 225
++R V+V +++ + + + LP VF PIR ++V +V+V+++KN++QP+ AG +
Sbjct: 1 MSRQTVNVLTQEGQ--KASTIELPKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKK 58
Query: 226 TSAESWGTGR 255
SA SWGTGR
Sbjct: 59 VSAISWGTGR 68
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 66.1 bits (154), Expect = 8e-10
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = +2
Query: 509 KVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
KV+ KTK+ V+ L++LKAW+DI KVY SQR+RAGKGKMRNR
Sbjct: 98 KVEGYKKTKEEVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNR 140
Score = 58.8 bits (136), Expect = 1e-07
Identities = 25/37 (67%), Positives = 30/37 (81%)
Frame = +1
Query: 145 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 255
D+VN VH ++ KN QPY VS+ AG+QTSAESWGTGR
Sbjct: 25 DVVNFVHSNLHKNDSQPYAVSESAGYQTSAESWGTGR 61
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 64.5 bits (150), Expect = 2e-09
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = +2
Query: 509 KVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 634
KV+ KT++AV+ L++LKAW+DI KVY SQR+RAGKGKMRN
Sbjct: 20 KVEGYKKTEEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRN 61
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 62.5 bits (145), Expect = 9e-09
Identities = 31/67 (46%), Positives = 38/67 (56%)
Frame = +1
Query: 55 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 234
P V V+ V A P P VF P+RPD++N VH + K R PY VS+ AG Q +A
Sbjct: 3 PTVKVFGPTGTQV--AELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTA 60
Query: 235 ESWGTGR 255
SWG GR
Sbjct: 61 HSWGPGR 67
Score = 56.4 bits (130), Expect = 6e-07
Identities = 46/144 (31%), Positives = 58/144 (40%), Gaps = 1/144 (0%)
Frame = +3
Query: 255 AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXX 434
AVAR+PR GG GA+ N RGG M PT RRW
Sbjct: 68 AVARLPRKHGG------IGAYANFARGGHMAHPTTVIRRWCRKVNLNQRRYAVASALAAS 121
Query: 435 XXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPN-RLSSS*GASRHGLISLRCTSLSVFV 611
+ARGH I +P +PLVV + T+ + + G R RC
Sbjct: 122 ANAALVEARGHRIADVPSIPLVVDTDNVTKTKDALAIIKAVGVLRD---VERCKDSRHIR 178
Query: 612 LVRVKCATVRRIQRKGPLIIFNKD 683
R K R I RKGPL+I+N +
Sbjct: 179 AGRGKMRNRRYITRKGPLVIYNTE 202
Score = 36.7 bits (81), Expect = 0.54
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 521 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
+ KTK A+ ++ + D+ + S+ +RAG+GKMRNR
Sbjct: 149 VTKTKDALAIIKAVGVLRDVERCKDSRHIRAGRGKMRNR 187
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 60.5 bits (140), Expect = 4e-08
Identities = 27/95 (28%), Positives = 45/95 (47%)
Frame = +3
Query: 258 VARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXX 437
+ARIPR++G GT ++GQGA NMCRGGR+F ++W+
Sbjct: 74 LARIPRIKGSGTRKAGQGALANMCRGGRLFGNRNYSKKWNIKTNRKVKVSAFKTALLSTL 133
Query: 438 XXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRL 542
+RGH ++ + P+++ + P+ L
Sbjct: 134 FETLVVSRGHSLKDVKNFPMIIDSILKYIWHPSEL 168
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 52.8 bits (121), Expect = 8e-06
Identities = 26/66 (39%), Positives = 38/66 (57%)
Frame = +1
Query: 55 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 234
P+ ++ E+ +TV+ LP F+ P+R DL+ ++ N RQPY AG +TSA
Sbjct: 4 PVFNLEGEEVDTVE-----LPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSA 58
Query: 235 ESWGTG 252
ESWG G
Sbjct: 59 ESWGAG 64
Score = 38.7 bits (86), Expect = 0.13
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +2
Query: 509 KVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
+++ +NK ++ F + + W+D+ + ++R+RAGKGK R R
Sbjct: 151 ELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGR 193
Score = 36.3 bits (80), Expect = 0.71
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +3
Query: 258 VARIPRVRGGGTHRSGQGAFGNMCRGG-RMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXX 434
VA +PRV+G +G+ A GG + APT P + W
Sbjct: 67 VAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPT-PEKDWTQRVNRKERRAALRSALAAT 125
Query: 435 XXXXXXQARGHIIEKIPELPLVVAEK 512
+ RGH+I+ +P LP+VV ++
Sbjct: 126 AKPEFVKERGHVIDDVPHLPVVVVDE 151
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 52.0 bits (119), Expect = 1e-05
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Frame = +3
Query: 207 QGGWSPNQC*IMGYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXX 386
+G + C G +ARIPR +G R G F RGGR P K ++ H
Sbjct: 76 EGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEI 132
Query: 387 XXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV---AEKSRRSTRPNRLSSS*G 557
ARGH++EK+P LP+VV AEK R+ +L + G
Sbjct: 133 NKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALG 192
Score = 38.7 bits (86), Expect = 0.13
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 515 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
++IN+ K+A L W D+ + + ++RAGKGKMR R
Sbjct: 176 EKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGR 216
Score = 37.1 bits (82), Expect = 0.41
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +1
Query: 115 PFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 252
P F PIRPDL+ ++S QP V + AG + S ES+G G
Sbjct: 45 PLHFLEPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVG 90
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +2
Query: 521 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
I KT +AV L++L A++DI KV S+ +R+GKGKMRNR
Sbjct: 164 IKKTAKAVELLKQLGAYADIEKVKASRNVRSGKGKMRNR 202
Score = 44.0 bits (99), Expect = 0.004
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Frame = +3
Query: 363 WRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV---AEKSRRSTRP 533
WRRWH ARGH +E +PE+PLVV A +++ +
Sbjct: 111 WRRWHRRVNIKEKRYAVCSAIAASAVPSLLLARGHRVEGVPEVPLVVDDSASSIKKTAKA 170
Query: 534 NRLSSS*GASRHGLISLRCTSLSVFVLVRVKCATVRRIQRKGPLIIFNKDQGL 692
L GA + I S +V + K R +QR+GPL+++++D G+
Sbjct: 171 VELLKQLGA--YADIEKVKASRNV-RSGKGKMRNRRYVQRRGPLVVYSEDNGV 220
Score = 35.9 bits (79), Expect = 0.94
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 97 GAAKPLPFVFKAPIRPDLVNDVHVSMSKN 183
GA+ +P VF +PIR D+VN VH ++KN
Sbjct: 15 GASCAMPEVFLSPIRADIVNAVHTGLAKN 43
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +1
Query: 61 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 240
++VYS K + + LP +F+ RPD++ +SM QP+ AG +T+AES
Sbjct: 4 INVYSLKGDITEEIE--LPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAES 61
Query: 241 WGTGR 255
+G+GR
Sbjct: 62 FGSGR 66
Score = 32.7 bits (71), Expect = 8.8
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +2
Query: 509 KVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
+++ + TK+ + L DI++ K +++++GKGK+R R
Sbjct: 147 EIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGR 189
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 43.2 bits (97), Expect = 0.006
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +2
Query: 512 VQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
V+ INKTK A+ L+ L + DI + + + +RAG+GKMR R
Sbjct: 149 VEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGR 190
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 42.7 bits (96), Expect = 0.008
Identities = 25/54 (46%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 242 GVLDGCRPN----SACPWWWYS*VRSGCLR*HVSWWTYVRPHEALAALAPSRQP 391
G L G RP SA W VR C+R HV WW +VR E L LAP QP
Sbjct: 115 GALVGHRPRRCAYSAHQRRWNEHVRRRCVRQHVPWWPHVRADEDLPPLAPQDQP 168
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 41.9 bits (94), Expect = 0.014
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +1
Query: 112 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 255
LP VF+ P+R DL+ + N +Q Y + AG +T AES+G+GR
Sbjct: 18 LPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGR 65
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 40.3 bits (90), Expect = 0.044
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +1
Query: 112 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG 246
LP +F P+R DL+ V ++ +S QP AG +TSAES+G
Sbjct: 25 LPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFG 69
Score = 38.3 bits (85), Expect = 0.18
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 461 RTHY*KDSRASP-GCSRKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
R H KDS P + + + T + FL+++ + D+ +V + R+RAGKGKMR R
Sbjct: 136 RGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGR 195
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 39.9 bits (89), Expect = 0.058
Identities = 26/83 (31%), Positives = 35/83 (42%)
Frame = +3
Query: 261 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 440
ARI R++GGG R G+ RGGR P K + H
Sbjct: 70 ARIARMKGGGGRRRGEAGEVASIRGGRQAHPPKVQKVIHKKINKKEKKLALCSAIAATAS 129
Query: 441 XXXXQARGHIIEKIPELPLVVAE 509
RGHII+ I ELP+V+++
Sbjct: 130 KSTVAGRGHIIDGI-ELPIVISD 151
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 39.5 bits (88), Expect = 0.076
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2
Query: 509 KVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
K++ KTK A+ FL+R A+ D+ KV ++ +RAG K R +
Sbjct: 4 KIESYEKTKDALNFLKRFGAFEDVQKVVSTKTIRAGVSKSRGK 46
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 37.9 bits (84), Expect = 0.23
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 112 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 252
LP VF RPD++ +++ + RQPY + +G S E+WG G
Sbjct: 18 LPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPG 64
Score = 36.3 bits (80), Expect = 0.71
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 503 SRKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
S +++ + +TK R + ++D+ + + +R RAG+GKMR R
Sbjct: 142 SNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGR 186
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 37.1 bits (82), Expect = 0.41
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +1
Query: 58 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 237
+V VY E+ LP +F+ P+R DL+ +S QP AG +TSA
Sbjct: 15 IVPVYDERGGEKDSVV--LPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAV 72
Query: 238 SWGTGR 255
S G GR
Sbjct: 73 SLGVGR 78
Score = 33.5 bits (73), Expect = 5.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 503 SRKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
S + +I+ ++A L + + D+L+ + +R AGKGKMR R
Sbjct: 157 SSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGR 201
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 35.9 bits (79), Expect = 0.94
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 515 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
+ + KT A+ L++ A+ D K S + GKGKMRNR
Sbjct: 22 ESVEKTSAAIDILKQFDAYLDTEKAKDSHAIHPGKGKMRNR 62
Score = 35.1 bits (77), Expect = 1.6
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +3
Query: 456 ARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLISLRCTSLSVFVLVRVKCAT 635
ARGH IE +PELPLV+ + + + + L + + + K
Sbjct: 2 ARGHRIESVPELPLVIGDSAESVEKTSAAIDILKQFDAYLDTEKAKDSHAIHPGKGKMRN 61
Query: 636 VRRIQRKGPLIIFNKD 683
R I RKGPLI++ +
Sbjct: 62 RRYISRKGPLIVYGME 77
>UniRef50_Q5NB71 Cluster: Putative uncharacterized protein
P0431F01.18; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0431F01.18 - Oryza sativa subsp. japonica (Rice)
Length = 320
Score = 35.5 bits (78), Expect = 1.2
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 261 ARIPRVRGGGTHRSGQGAFGNMCRGG 338
AR PR GGG HR GA G + RGG
Sbjct: 201 ARRPRAAGGGKHRGAHGANGGVARGG 226
>UniRef50_Q6ZR89 Cluster: CDNA FLJ46551 fis, clone THYMU3038687;
n=1; Homo sapiens|Rep: CDNA FLJ46551 fis, clone
THYMU3038687 - Homo sapiens (Human)
Length = 189
Score = 34.7 bits (76), Expect = 2.2
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Frame = +2
Query: 254 GCRPNSACPWW-----WYS*VRSGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGG 418
GCR +AC W W++ V +GC W + H R+P E L G
Sbjct: 81 GCRSTAACSRWRGCRPWWASVCTGCRSCVQRWRNSHQDHVLWGGPPEPRRPVGVERSLHG 140
Query: 419 SRCCYRRPSARS 454
+ C P+ RS
Sbjct: 141 APSCLSTPAPRS 152
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 34.3 bits (75), Expect = 2.9
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = +1
Query: 85 ETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK-------EAGHQTSAESW 243
E G A LP VF IR DL+ ++ N RQ Y + +AG + S E W
Sbjct: 41 EAKNGKAVTLPDVFSGEIREDLIRRAVLASRANRRQSYGHREHDGKRKPQAGMKHSVEWW 100
Query: 244 GTGR 255
G GR
Sbjct: 101 GKGR 104
>UniRef50_Q9VJJ9 Cluster: CG31738-PB, isoform B; n=3; Drosophila
melanogaster|Rep: CG31738-PB, isoform B - Drosophila
melanogaster (Fruit fly)
Length = 1700
Score = 33.9 bits (74), Expect = 3.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -1
Query: 351 GRTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQPSSTP*FSTGLVTSLLAHAVGLPRVL 178
G T HH + H + HH H G S++ + ++S LA A GL R++
Sbjct: 1601 GATDSHHQHQHHMHHSHHMHHAHHPHTGMGGSSSNSSSSTAAAISSSLAQAGGLRRIV 1658
>UniRef50_A1FG00 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas putida W619|Rep: Putative uncharacterized
protein - Pseudomonas putida W619
Length = 852
Score = 33.5 bits (73), Expect = 5.0
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 361 PGGVGTVASTSDSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 495
P V +V SD G WRQ L + + FRL LK P+ P
Sbjct: 321 PAFVSSVVKVSDRGPYTWRQALAISDAALKFRLNIGKLKASPALP 365
>UniRef50_UPI0000F2E6E2 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 293
Score = 32.7 bits (71), Expect = 8.8
Identities = 18/37 (48%), Positives = 19/37 (51%)
Frame = +2
Query: 347 RPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG 457
RP A AA P RQ P E GGS Y P+ RSG
Sbjct: 122 RPGPAQAARPPPRQWPCTECPGGGSGVVYHLPTERSG 158
>UniRef50_UPI0000F212F9 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 194
Score = 32.7 bits (71), Expect = 8.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 336 HHDTCYRRHPDRTYEYHHHGHAEFGRQP 253
HH + RH DR + HHHG G +P
Sbjct: 132 HHTRHHTRHHDRHHGRHHHGRHHHGHRP 159
>UniRef50_A5UPY3 Cluster: HAD-superfamily hydrolase, subfamily IA,
variant 1; n=2; Roseiflexus|Rep: HAD-superfamily
hydrolase, subfamily IA, variant 1 - Roseiflexus sp.
RS-1
Length = 223
Score = 32.7 bits (71), Expect = 8.8
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 121 RTGGA-WLHPAPSHSSLSTPTLKVGLPIDSFRYFSEAIPP 5
R GG WLH A SH P +++GLP+ E +PP
Sbjct: 163 RIGGLRWLHAAQSHFHDVVPAVQMGLPVAWINRKHEPLPP 202
>UniRef50_A0GGU8 Cluster: Putative uncharacterized protein; n=1;
Burkholderia phytofirmans PsJN|Rep: Putative
uncharacterized protein - Burkholderia phytofirmans PsJN
Length = 753
Score = 32.7 bits (71), Expect = 8.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 348 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQ 256
R + HHD C R R ++HHHGH GR+
Sbjct: 478 RDHHHHDRCLRDR--RRRDHHHHGHRLRGRR 506
>UniRef50_Q653W4 Cluster: Non-specific lipid-transfer protein; n=14;
root|Rep: Non-specific lipid-transfer protein - Oryza
sativa subsp. japonica (Rice)
Length = 270
Score = 32.7 bits (71), Expect = 8.8
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 358 SPGGVGTVASTSDSGER-PWRQPLLLPASQRSFRLEDTLLKRFPSFPWL*PKSPGDQQDQ 534
S GG G ++ SG R P+ PL PA + FP+FP+ P SP Q
Sbjct: 86 SSGGGGAAPPSAGSGFRFPFPLPLPFPAPASPGGAPPSSGSGFPAFPFPFPSSPVSPPSQ 145
Query: 535 TGCHLPEAP 561
P AP
Sbjct: 146 ASPASPAAP 154
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,683,263
Number of Sequences: 1657284
Number of extensions: 14372581
Number of successful extensions: 46073
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 42977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45804
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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