Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0057
         (640 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    71   3e-11
UniRef50_Q12955 Cluster: Ankyrin-3; n=78; root|Rep: Ankyrin-3 - ...    33   5.8  
UniRef50_Q8IGW8 Cluster: RE11603p; n=4; Sophophora|Rep: RE11603p...    33   7.7  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 70.5 bits (165), Expect = 3e-11
 Identities = 33/47 (70%), Positives = 37/47 (78%)
 Frame = +2

Query: 101  STVLSVRSFLPCTVQFWNAFPSTVFPIRYDMSFFKRGPRRVLSGKKR 241
            STV   RSFLP T++ WN  PSTVFP RYDMSFFKRG  RVLSG++R
Sbjct: 926  STVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQR 972



 Score = 42.7 bits (96), Expect = 0.007
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +3

Query: 3   EELFEMMRSSPFKHCTAGLQNRAPPYYLEPLR 98
           EELFEM+ +S F H TA  ++R  PYYLEPLR
Sbjct: 893 EELFEMIPASRFYHRTARHRSRVHPYYLEPLR 924


>UniRef50_Q12955 Cluster: Ankyrin-3; n=78; root|Rep: Ankyrin-3 - Homo
            sapiens (Human)
          Length = 4377

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 10/23 (43%), Positives = 21/23 (91%)
 Frame = +1

Query: 274  NDSRLPVRAIKVKKDLWDKKSIV 342
            +DS+LP++A+++KKD+W+ + I+
Sbjct: 3430 SDSKLPIQAMEIKKDIWNTEGIL 3452


>UniRef50_Q8IGW8 Cluster: RE11603p; n=4; Sophophora|Rep: RE11603p -
           Drosophila melanogaster (Fruit fly)
          Length = 360

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = -2

Query: 255 RGRXRRFLPLSTLRG-PRLKKDMS*RIGNTVEGNAFQN---WTVHGRKDLTESTVDNAVV 88
           RG+  +  P  T    P+ K DMS   G T+EGN  QN     V  R  L     D  ++
Sbjct: 56  RGKKSKMQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTDRFLM 115

Query: 87  LDNMEELYSGD 55
            ++M EL+  D
Sbjct: 116 EEHMSELHKDD 126


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,474,229
Number of Sequences: 1657284
Number of extensions: 10487889
Number of successful extensions: 21543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21541
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)