Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0092
         (617 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1I999 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_A7D2Y5 Cluster: PAS sensor protein; n=1; Halorubrum lac...    34   3.1  
UniRef50_UPI00005A6024 Cluster: PREDICTED: similar to Zinc finge...    33   4.1  
UniRef50_A7PR86 Cluster: Chromosome chr14 scaffold_26, whole gen...    33   5.5  
UniRef50_Q6MC56 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  

>UniRef50_Q1I999 Cluster: Putative uncharacterized protein; n=1;
            Pseudomonas entomophila L48|Rep: Putative uncharacterized
            protein - Pseudomonas entomophila (strain L48)
          Length = 1671

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = +2

Query: 35   LCL*DMKINFM*NQMYLLVKIRLEAVNIKINRVTIDRLTHRRGFRKL 175
            LCL   ++  + + M LL  +RLE ++++ NR+T+D  +  R FR+L
Sbjct: 1147 LCLPRNRLTLVADDMQLLTSLRLETLDLRSNRITLDAASAGR-FREL 1192


>UniRef50_A7D2Y5 Cluster: PAS sensor protein; n=1; Halorubrum
           lacusprofundi ATCC 49239|Rep: PAS sensor protein -
           Halorubrum lacusprofundi ATCC 49239
          Length = 921

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 574 FAESTTGSETRPTEKIR-RELSGLCVWVNSFFESFVASDRFDEDGVTG 434
           FA+S TG E  PT + R  +  G  +WV S     V S+R D+ GV+G
Sbjct: 321 FAQSVTGDEPNPTVEYRLADADGGYLWVES-----VGSNRLDDHGVSG 363


>UniRef50_UPI00005A6024 Cluster: PREDICTED: similar to Zinc finger
           protein 185 (LIM-domain protein ZNF185) (P1-A); n=5;
           Laurasiatheria|Rep: PREDICTED: similar to Zinc finger
           protein 185 (LIM-domain protein ZNF185) (P1-A) - Canis
           familiaris
          Length = 734

 Score = 33.5 bits (73), Expect = 4.1
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 345 TIPMTARCKVIRHY----GFSRSINGAFRYLPQAPVTPSSSNRSLATKDSK 485
           T P+ + C+  +H+    G S+S  G  R  P  P  PSSS   + T+D K
Sbjct: 238 TKPIDSSCQPQQHFPKANGASKSATGLLRAAPTGPPRPSSSGYKMTTEDYK 288


>UniRef50_A7PR86 Cluster: Chromosome chr14 scaffold_26, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr14 scaffold_26, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 142

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +3

Query: 393 SRSINGAFRYLPQAPVTPSSSNRSLATKDSKNELTHTHNPLSSRRIFSVGRVSDPVVDSA 572
           +++IN    +LP+A    +SS+RS AT +S   + HT  PL       + R S+  + + 
Sbjct: 11  TKTINPITTFLPEAEQASASSHRSHATFESLPSVRHTSCPLHLLAP-PIPRFSNYTMTAG 69

Query: 573 KHYPC*GQC*QHS 611
              P   QC  HS
Sbjct: 70  VRIPLCVQCGTHS 82


>UniRef50_Q6MC56 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Protochlamydia amoebophila UWE25|Rep:
           Putative uncharacterized protein - Protochlamydia
           amoebophila (strain UWE25)
          Length = 321

 Score = 32.7 bits (71), Expect = 7.2
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
 Frame = +2

Query: 122 INRVTIDRLTHRRGFRKLIYIFFYHTILLLHFGRHTRKRVMYVFHYKNVYLPAVLEPWAW 301
           +N+ +   + +   F  +I++FF +T      G      V  +F  +  YL      W  
Sbjct: 28  VNQFSKTLMAYMNYFLSIIFLFFINTCE----GYIYDLSVCAIFKNEAPYL----REWIE 79

Query: 302 SHRLILVRAFYL-GHDNSN--DCKMQGYTSLRILSI 400
            HRLI V+ FYL  HD+++  DC ++ Y  L I+ +
Sbjct: 80  YHRLIGVKHFYLYNHDSTDHYDCILEPYIQLGIVEL 115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,813,513
Number of Sequences: 1657284
Number of extensions: 11558416
Number of successful extensions: 31060
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31049
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)