Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0060
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000EBE737 Cluster: PREDICTED: hypothetical protein;...    33   6.7  
UniRef50_UPI00005A021D Cluster: PREDICTED: hypothetical protein ...    33   8.8  
UniRef50_Q95X38 Cluster: Putative uncharacterized protein; n=2; ...    33   8.8  

>UniRef50_UPI0000EBE737 Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 349

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +3

Query: 183 LPLHAPFVQQRWENGNTVCSPLCSRHPCADNAAPRYRGARLSP 311
           LPL AP   + W  G  V SP  SRHP ++   P  RGA   P
Sbjct: 223 LPLPAPPRPRGWRAGLGVKSP--SRHPTSEPPGPSQRGAERKP 263


>UniRef50_UPI00005A021D Cluster: PREDICTED: hypothetical protein
           XP_857707; n=1; Canis lupus familiaris|Rep: PREDICTED:
           hypothetical protein XP_857707 - Canis familiaris
          Length = 281

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 240 SPLCSRHPCADNAAPRYRGARLSPTAA 320
           +P C  HPC    AP  RGA   PTA+
Sbjct: 216 TPSCPAHPCVRGTAPGARGASCHPTAS 242


>UniRef50_Q95X38 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 707

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = -3

Query: 550 LLERHTRQCPKVKQKIYFHKDVTSDWEWN*HNIMYNNISNHLTNEVIK 407
           LL  +T+ CP V QKIYF K   S+   + H ++ N ++ H   E+IK
Sbjct: 170 LLLLNTKICPHVSQKIYFCKTTKSE---SVHQVVLNKLTLHF--EIIK 212


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 764,867,008
Number of Sequences: 1657284
Number of extensions: 17046832
Number of successful extensions: 43035
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43014
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)