Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0132
         (544 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56635 Cluster: PREDICTED: similar to CG12189-PA...    33   3.2  
UniRef50_A7M6L1 Cluster: Polyprotein; n=2; Radish mosaic virus|R...    33   5.6  
UniRef50_Q21N90 Cluster: Type III restriction enzyme, res subuni...    33   5.6  
UniRef50_Q23ZB5 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_Q22SN2 Cluster: B-box zinc finger family protein; n=1; ...    32   7.4  
UniRef50_Q5ACI1 Cluster: Putative uncharacterized protein HMI1; ...    32   7.4  

>UniRef50_UPI0000D56635 Cluster: PREDICTED: similar to CG12189-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG12189-PA - Tribolium castaneum
          Length = 825

 Score = 33.5 bits (73), Expect = 3.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 171 VFPKTLDEPTLNKEFVKCDDLFSNLSKILYRTDLCGEVW 55
           V  KTL   TLN E V CD+++  +S +L   DL  E W
Sbjct: 324 VLYKTLASYTLNIEAVSCDEMYVEVSDLLKSYDLSVEDW 362


>UniRef50_A7M6L1 Cluster: Polyprotein; n=2; Radish mosaic virus|Rep:
           Polyprotein - Radish mosaic virus
          Length = 1853

 Score = 32.7 bits (71), Expect = 5.6
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 237 ILRLHIWWQDVTARTDICIAGDKQSYIALRMGDNPHTTLR--FDSDVGWQQIFVCSGEIT 410
           I+++H+  +D+ AR D     DK +YI     +  H  +R  FDS  GW ++ +C   + 
Sbjct: 768 IVKMHL--KDL-AREDFY--DDKMNYIGTFGNEREHALMRSTFDSMAGWHKVVLCGMGVL 822

Query: 411 PGRC 422
             RC
Sbjct: 823 QDRC 826


>UniRef50_Q21N90 Cluster: Type III restriction enzyme, res subunit;
           n=2; Alteromonadales|Rep: Type III restriction enzyme,
           res subunit - Saccharophagus degradans (strain 2-40 /
           ATCC 43961 / DSM 17024)
          Length = 895

 Score = 32.7 bits (71), Expect = 5.6
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = -2

Query: 189 TLFRHNVFPKTLDEPTLNKEFVKCDDLFSNLSKILYRTDLCGEVWRRPMSRSGCLWADKI 10
           TL    +F KT +    NK+F++        +++LY+T+L  E  RR M RS  L A KI
Sbjct: 331 TLVEAVLFSKTFEHNESNKKFIEALKKQLRAAELLYKTELSFEHSRR-MERSLSLSATKI 389

Query: 9   E 7
           +
Sbjct: 390 D 390


>UniRef50_Q23ZB5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 846

 Score = 32.7 bits (71), Expect = 5.6
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
 Frame = -2

Query: 375 IQHQNQTSMLCEDCPPFEAQYMIACHQQYIYQCGQ*HPATIYAIVVYIAQITILPILWL- 199
           IQ Q   S++C++CP  E +Y +  +     QC    P T  AI  Y + I +    W  
Sbjct: 317 IQKQIGDSIICDECP--EGKYSLNQNDLSCQQC----PDT--AIKCYSSTINLKNGYWRL 368

Query: 198 -NQFTLFRHNVFPKTLDEPTLNKEFVKCDDLFSNLSKILYRTDLCGEVW 55
            NQ       +F +   +P   +    C  +  N+  + Y  D+ G+VW
Sbjct: 369 NNQTDNIIQCIFNRDSCQPESPESKFNC--IKGNIGPLCYSCDIYGDVW 415


>UniRef50_Q22SN2 Cluster: B-box zinc finger family protein; n=1;
           Tetrahymena thermophila SB210|Rep: B-box zinc finger
           family protein - Tetrahymena thermophila SB210
          Length = 1890

 Score = 32.3 bits (70), Expect = 7.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 261 ATIYAIVVYIAQITILPILWLNQFTLFRHNVFPKTL 154
           AT+ ++ + I  IT++ + W  +FT   H+ +PK L
Sbjct: 653 ATMLSLGILIKGITMIMLFWAFKFTFINHSAYPKCL 688


>UniRef50_Q5ACI1 Cluster: Putative uncharacterized protein HMI1;
           n=1; Candida albicans|Rep: Putative uncharacterized
           protein HMI1 - Candida albicans (Yeast)
          Length = 637

 Score = 32.3 bits (70), Expect = 7.4
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 285 ICIAGDKQSYIALRMGDNPHTTLRFDSDVGWQQIFVCSGE---ITPGRCELF*LYKATNQ 455
           I +AGD    I   +G +P  T +F S +GW+   +C  E   +TP    +  +    N+
Sbjct: 227 ITLAGDSNQCIYEFLGSSPDITQKFVSSLGWETEEICLNESFRLTPENLHISNMVIDQNK 286

Query: 456 IV*K 467
           +V K
Sbjct: 287 LVSK 290


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,399,748
Number of Sequences: 1657284
Number of extensions: 11982665
Number of successful extensions: 28551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28544
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)