Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0104
         (574 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1C7A2 Cluster: C2H2 type zinc finger domain protein; n...    33   6.3  
UniRef50_A6GGR9 Cluster: Serine/threonine protein kinase; n=2; P...    32   8.3  

>UniRef50_A1C7A2 Cluster: C2H2 type zinc finger domain protein; n=1;
           Aspergillus clavatus|Rep: C2H2 type zinc finger domain
           protein - Aspergillus clavatus
          Length = 185

 Score = 32.7 bits (71), Expect = 6.3
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 567 PRGPHGCEECLTTRGRGDVTRLH-TACVFCFSNGQ*ITQ 454
           P  PH C+ C +T  RGDV R H T C     +GQ + Q
Sbjct: 49  PPRPHKCQFCGSTYTRGDVLRRHWTTCAKRRESGQAVPQ 87


>UniRef50_A6GGR9 Cluster: Serine/threonine protein kinase; n=2;
           Plesiocystis pacifica SIR-1|Rep: Serine/threonine
           protein kinase - Plesiocystis pacifica SIR-1
          Length = 914

 Score = 32.3 bits (70), Expect = 8.3
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 18  LSFIDTQFGRASPARHHYSGPWTSE*RDLC*I-PTESTCEVQASVYL 155
           LS+ D  FGRAS     Y+  WT   R+ C   P E+T E   S  L
Sbjct: 414 LSYADESFGRASGWMDRYAAEWTDARREACMARPPEATGEDPRSACL 460


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,925,121
Number of Sequences: 1657284
Number of extensions: 9186177
Number of successful extensions: 21843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21839
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)