Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0047
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23Q43 Cluster: Putative uncharacterized protein; n=1; ...    34   2.6  
UniRef50_Q6ZUR3 Cluster: CDNA FLJ43411 fis, clone OCBBF2021286; ...    33   4.5  
UniRef50_Q244W5 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  
UniRef50_A0CZU7 Cluster: Chromosome undetermined scaffold_32, wh...    33   7.8  

>UniRef50_Q23Q43 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 3006

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 20/56 (35%), Positives = 33/56 (58%)
 Frame = +3

Query: 234  IMSISVTRRLHGLLLFVNVCFSLIDLLEIRFILSIVRIRLSQSLLDIPAPLITSKS 401
            I  ++V  R H  +L++    S+IDLLE  F  +I R++  +S +D P P+I  +S
Sbjct: 889  IQQLTVNFRSHNKILYL--ANSVIDLLEFFFPETIDRLKKEKSSIDGPKPIILGES 942


>UniRef50_Q6ZUR3 Cluster: CDNA FLJ43411 fis, clone OCBBF2021286;
           n=1; Homo sapiens|Rep: CDNA FLJ43411 fis, clone
           OCBBF2021286 - Homo sapiens (Human)
          Length = 233

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
 Frame = +3

Query: 180 WPFDCRVGHRCPTRRTEVIMS-ISVTRRLHGLLLFVNVCFSLIDLLEIRFILSI-VRIRL 353
           W F  +  +   T+   V +S +  TRRL   LL  N+C SL   L +   LS+ + + L
Sbjct: 74  WLFPWQCDYPALTQSKGVPLSWVKFTRRLLKCLLRGNLCLSLSLSLSLSLSLSLSLSLSL 133

Query: 354 SQ--SLLDIPAPLITSKST*LLQYLKIFFSCRVKYLFSL 464
           SQ  SLL    P   SK+  L++ L    +  + +  SL
Sbjct: 134 SQCISLLSFTFPFFLSKNNVLVEALVTLINQNLPFPVSL 172


>UniRef50_Q244W5 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 3114

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 447  KYLFSLDFYIQEITKSAHLIFHTLCQTVIIWGQG*KSSNFFL 572
            KYL + D+Y Q I       F++ CQT I++ Q   S NF+L
Sbjct: 1074 KYLQTFDYYTQNIFTPDLTYFYSNCQTFIVFDQ---SQNFYL 1112


>UniRef50_A0CZU7 Cluster: Chromosome undetermined scaffold_32, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_32,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 521

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 346 IRTILRMNRISKRSMRLKHTLTNNRRPCRRLVTEIDIITSVRRVGH 209
           +RTI+ +   S+  ++++  L+NNRR  R  V ++D    V   GH
Sbjct: 444 LRTIIELRSQSELDLKVQSQLSNNRRQSRLAVNQVDDFDLVPDEGH 489


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,762,898
Number of Sequences: 1657284
Number of extensions: 12453891
Number of successful extensions: 25508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25505
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)