Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0235
         (657 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6FW20 Cluster: Candida glabrata strain CBS138 chromoso...    33   4.6  
UniRef50_Q9UQ35 Cluster: Serine/arginine repetitive matrix prote...    33   8.0  

>UniRef50_Q6FW20 Cluster: Candida glabrata strain CBS138 chromosome
           D complete sequence; n=1; Candida glabrata|Rep: Candida
           glabrata strain CBS138 chromosome D complete sequence -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 689

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -2

Query: 392 DARTTSGGLIVRTPVESSRTIVPHTRTRYPQMIQKKLTHQRSNISAA*TRRATL-AGPSL 216
           +A TTS   +  TP+E S      T  R    IQ++   +         +R T+ + PS+
Sbjct: 575 NANTTSAAAMNSTPIEQSTIRKVSTTRRSISTIQEEDQDEADEDKRMSKKRKTIPSSPSM 634

Query: 215 VESYKTKRDSSE*TMRQCTKFTSHSLE 135
           + SY     SSE T    T F ++ +E
Sbjct: 635 MFSYHDGSPSSEITNELFTSFINNGIE 661


>UniRef50_Q9UQ35 Cluster: Serine/arginine repetitive matrix protein 2;
            n=8; Eumetazoa|Rep: Serine/arginine repetitive matrix
            protein 2 - Homo sapiens (Human)
          Length = 2752

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 25/94 (26%), Positives = 42/94 (44%)
 Frame = -2

Query: 341  SRTIVPHTRTRYPQMIQKKLTHQRSNISAA*TRRATLAGPSLVESYKTKRDSSE*TMRQC 162
            SR+  P TR R           +  + +   TRR + +  S +   +++  +S  T R+ 
Sbjct: 1935 SRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRS 1994

Query: 161  TKFTSHSLEILSKWRSARTTRRSQQNDAPPHIRR 60
               TS      S+ R++  TRR  ++  PP IRR
Sbjct: 1995 RSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRR 2028


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,304,688
Number of Sequences: 1657284
Number of extensions: 9807525
Number of successful extensions: 22385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22380
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)