Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0185
         (665 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55F2A Cluster: PREDICTED: hypothetical protein;...    49   1e-04
UniRef50_A0NF98 Cluster: ENSANGP00000030859; n=1; Anopheles gamb...    46   8e-04
UniRef50_A1ZAV3 Cluster: CG4903-PA; n=4; Sophophora|Rep: CG4903-...    34   2.7  
UniRef50_Q4J3L4 Cluster: Oxidoreductase, N-terminal:Oxidoreducta...    33   4.7  
UniRef50_Q316S8 Cluster: Rhodanese-like domain/cysteine-rich dom...    33   8.2  

>UniRef50_UPI0000D55F2A Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 99

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 263 RRACVRRGGNCDHRPGDCC 319
           +RACVRRGGNCDHRP DCC
Sbjct: 55  KRACVRRGGNCDHRPNDCC 73



 Score = 43.6 bits (98), Expect = 0.004
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 319 HSSSCRCNLWGSNCRCSAWG 378
           ++SSCRCNLWGSNCRC   G
Sbjct: 74  YNSSCRCNLWGSNCRCQRMG 93


>UniRef50_A0NF98 Cluster: ENSANGP00000030859; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000030859 - Anopheles gambiae
           str. PEST
          Length = 125

 Score = 46.0 bits (104), Expect = 8e-04
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 319 HSSSCRCNLWGSNCRCSAWG 378
           H+SSCRCNLWGSNCRC   G
Sbjct: 100 HNSSCRCNLWGSNCRCQRMG 119



 Score = 44.8 bits (101), Expect = 0.002
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 257 VFRRACVRRGGNCDHRPGDCC 319
           V+RR C+ RGGNCDHR  DCC
Sbjct: 79  VYRRGCIPRGGNCDHRSNDCC 99


>UniRef50_A1ZAV3 Cluster: CG4903-PA; n=4; Sophophora|Rep: CG4903-PA -
            Drosophila melanogaster (Fruit fly)
          Length = 2171

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 20/41 (48%), Positives = 23/41 (56%)
 Frame = +1

Query: 322  SSSCRCNLWGSNCRCSAWGSSEVGVGDNDRSSSEAATNSSQ 444
            SSSC C   GSNC CS+  SS    G++D S S  A  S Q
Sbjct: 1630 SSSCSC---GSNCSCSSSNSSS-SSGNSDDSDSSTARGSPQ 1666


>UniRef50_Q4J3L4 Cluster: Oxidoreductase, N-terminal:Oxidoreductase,
           C-terminal; n=1; Azotobacter vinelandii AvOP|Rep:
           Oxidoreductase, N-terminal:Oxidoreductase, C-terminal -
           Azotobacter vinelandii AvOP
          Length = 336

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = +1

Query: 289 QLRPSTGRLLHSSSCRCNLWGSNCRCSAWGSSEVGVGDNDRSSSEAATNSSQ 444
           Q+R ++G+  H + CR  ++G + R  A+GS  + + DN R ++    NS+Q
Sbjct: 214 QMRTASGKQCHINCCRSAVYGYDQRFEAFGSVGMLLQDNLRPTTIRRWNSTQ 265


>UniRef50_Q316S8 Cluster: Rhodanese-like domain/cysteine-rich domain
           protein; n=1; Desulfovibrio desulfuricans G20|Rep:
           Rhodanese-like domain/cysteine-rich domain protein -
           Desulfovibrio desulfuricans (strain G20)
          Length = 392

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 419 LKRRPTPASRLDRRSPEATTFATQNGPVRLFPSILHIALIINSQ 550
           L RRP  A+  DR +P  T       P+R FP+I H A ++ ++
Sbjct: 235 LARRPAMAAGHDRSAPSCTAALHDPCPLREFPAIHHAARVLAAE 278


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,970,674
Number of Sequences: 1657284
Number of extensions: 11026056
Number of successful extensions: 32197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32050
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)