Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0164
         (665 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9ZNF6 Cluster: Transmembrane protein; n=2; Bacillus|Re...    33   6.2  
UniRef50_UPI00015C4B07 Cluster: phosphoribosylformylglycinamidin...    33   8.2  

>UniRef50_Q9ZNF6 Cluster: Transmembrane protein; n=2; Bacillus|Rep:
           Transmembrane protein - Bacillus licheniformis
          Length = 421

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 75  KTTFSIYEFKNYAMVKYREYTKKINSVCGLXFILYLAVE 191
           K  FSI++ KNYA++ +  +T ++  + GL  +L+  ++
Sbjct: 2   KKMFSIFQNKNYALLFFASFTSQMGGIIGLTALLFYLLD 40


>UniRef50_UPI00015C4B07 Cluster: phosphoribosylformylglycinamidine
           cyclo-ligase; n=1; Campylobacter concisus 13826|Rep:
           phosphoribosylformylglycinamidine cyclo-ligase -
           Campylobacter concisus 13826
          Length = 571

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = -2

Query: 349 G*FHSL*LSYMXNIGLLYCVNSFFAITSLRTSVSNTFVAVTXT*NPKXPGAEFST---AK 179
           G F  + L+Y   I +L C  +FF +TSL+T ++   +      NP   G  F T   AK
Sbjct: 70  GLFKGVYLAYALTIFVL-CFINFFTLTSLKTDINIAIIDSVLHTNPDEAGEFFQTFFEAK 128

Query: 178 YKMNXKPQTLLIFFVYSRY 122
           Y +       +IF+  +RY
Sbjct: 129 Y-LVVAILLCIIFYFMTRY 146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,113,513
Number of Sequences: 1657284
Number of extensions: 9803511
Number of successful extensions: 14889
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14887
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)