Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0114
(650 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 160 2e-38
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 159 7e-38
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 142 5e-33
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 125 9e-32
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 118 9e-26
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 117 3e-25
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 115 9e-25
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 115 1e-24
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 115 1e-24
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 114 2e-24
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 99 1e-19
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 87 5e-16
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 66 9e-10
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 65 2e-09
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 63 6e-09
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 63 6e-09
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 59 8e-08
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 59 8e-08
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 59 8e-08
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 59 1e-07
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 57 3e-07
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 56 1e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 53 5e-06
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 50 4e-05
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 50 6e-05
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 49 1e-04
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 47 5e-04
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 45 0.001
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 43 0.007
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 41 0.030
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 38 0.28
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 38 0.28
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 35 1.5
UniRef50_Q8U0H1 Cluster: ATP-binding protein phnp; n=4; Thermoco... 35 1.9
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 35 1.9
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 33 5.9
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 160 bits (389), Expect = 2e-38
Identities = 76/132 (57%), Positives = 91/132 (68%)
Frame = +2
Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 433
L+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 69 LVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKK 128
Query: 434 VATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVT 613
G K VP+LVTHDGRTIRYPDPL + + ++ G
Sbjct: 129 TQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188
Query: 614 WGAVGTIVSRER 649
G VGT+V+RER
Sbjct: 189 LGRVGTVVNRER 200
Score = 128 bits (310), Expect = 9e-29
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +3
Query: 51 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 231 VLKIVKQR 254
V KIV QR
Sbjct: 61 VTKIVMQR 68
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 159 bits (385), Expect = 7e-38
Identities = 75/136 (55%), Positives = 89/136 (65%)
Frame = +2
Query: 242 CETTLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLC 421
C IK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLC
Sbjct: 65 CMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLC 124
Query: 422 KVKRVATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SR 601
KV+++ G K +P+LVTHD RTIRYPDPL K L+ ++ G
Sbjct: 125 KVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVT 184
Query: 602 EAVTWGAVGTIVSRER 649
G +G I +RER
Sbjct: 185 GGANLGRIGVITNRER 200
Score = 127 bits (307), Expect = 2e-28
Identities = 58/68 (85%), Positives = 62/68 (91%)
Frame = +3
Query: 51 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 231 VLKIVKQR 254
V KI QR
Sbjct: 61 VKKICMQR 68
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 142 bits (345), Expect = 5e-33
Identities = 72/131 (54%), Positives = 85/131 (64%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ +
Sbjct: 70 IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129
Query: 437 ATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTW 616
G K +PYL T+DGRTIRYPDPL K L+ ++ G V
Sbjct: 130 QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR 189
Query: 617 GAVGTIVSRER 649
G VG I +RE+
Sbjct: 190 GRVGVIKNREK 200
Score = 117 bits (281), Expect = 3e-25
Identities = 52/68 (76%), Positives = 59/68 (86%)
Frame = +3
Query: 51 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 231 VLKIVKQR 254
V+ I+ QR
Sbjct: 61 VISILMQR 68
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 125 bits (302), Expect = 8e-28
Identities = 57/67 (85%), Positives = 61/67 (91%)
Frame = +3
Query: 54 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 233
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 234 LKIVKQR 254
KI QR
Sbjct: 62 KKICMQR 68
Score = 95.9 bits (228), Expect(2) = 9e-32
Identities = 43/56 (76%), Positives = 47/56 (83%)
Frame = +2
Query: 242 CETTLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 409
C IK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 65 CMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 64.1 bits (149), Expect(2) = 9e-32
Identities = 32/81 (39%), Positives = 41/81 (50%)
Frame = +2
Query: 407 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGT 586
+YKLCKVK++ G K +P+LVTHD RTIRYPDPL K L ++
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 587 CV*SREAVTWGAVGTIVSRER 649
G +G I +RER
Sbjct: 212 MCMVTGGANLGRIGVITNRER 232
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 118 bits (285), Expect = 9e-26
Identities = 59/136 (43%), Positives = 78/136 (57%)
Frame = +2
Query: 242 CETTLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLC 421
C IKVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLC
Sbjct: 75 CMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLC 134
Query: 422 KVKRVATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SR 601
K++++ K +P+LV HD T+R+PD L K L+ ++ T+ G
Sbjct: 135 KMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVT 193
Query: 602 EAVTWGAVGTIVSRER 649
WG +G I +RER
Sbjct: 194 GGGNWGRIGVITNRER 209
Score = 102 bits (244), Expect = 9e-21
Identities = 50/70 (71%), Positives = 58/70 (82%)
Frame = +3
Query: 42 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 221
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALT
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALT 67
Query: 222 GNEVLKIVKQ 251
G+EV KI Q
Sbjct: 68 GDEVKKICMQ 77
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 117 bits (281), Expect = 3e-25
Identities = 58/130 (44%), Positives = 78/130 (60%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++
Sbjct: 70 IKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKR 129
Query: 437 ATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTW 616
G +PY+VTHDGRTIRYP P ++ L+ ++ G
Sbjct: 130 VLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGM 189
Query: 617 GAVGTIVSRE 646
G VG IV RE
Sbjct: 190 GRVGVIVKRE 199
Score = 109 bits (262), Expect = 6e-23
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = +3
Query: 51 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 231 VLKIVKQRS 257
V IVK R+
Sbjct: 61 VTMIVKNRT 69
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 115 bits (277), Expect = 9e-25
Identities = 52/87 (59%), Positives = 67/87 (77%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
I VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV
Sbjct: 70 IYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRV 129
Query: 437 ATGPKNVPYLVTHDGRTIRYPDPLSKS 517
+ G K +PY+VTHDGRTIR+P+ L KS
Sbjct: 130 SIGSKGIPYIVTHDGRTIRFPNLLIKS 156
Score = 93.1 bits (221), Expect = 5e-18
Identities = 40/67 (59%), Positives = 53/67 (79%)
Frame = +3
Query: 51 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 231 VLKIVKQ 251
L I+K+
Sbjct: 61 SLNILKK 67
Score = 40.3 bits (90), Expect = 0.039
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +1
Query: 511 KVNDSIQLDIATTKIMDFIKFESGNLCMI 597
K NDSI LD+ K++DFIKF G+LC++
Sbjct: 155 KSNDSIVLDLLNNKVIDFIKFSIGSLCVV 183
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 115 bits (276), Expect = 1e-24
Identities = 50/81 (61%), Positives = 61/81 (75%)
Frame = +2
Query: 263 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 442
VDGKVR D YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A
Sbjct: 184 VDGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAI 243
Query: 443 GPKNVPYLVTHDGRTIRYPDP 505
GP +PY+VTHD RTIR+P+P
Sbjct: 244 GPNQIPYIVTHDSRTIRFPNP 264
Score = 65.3 bits (152), Expect = 1e-09
Identities = 41/96 (42%), Positives = 52/96 (54%), Gaps = 29/96 (30%)
Frame = +3
Query: 54 ARGPKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP- 155
ARGPKKHLKR+NAPK+WML+KLGG +Y + +T P
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 156 ---HKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 254
HKLRE LPL + L+ RL YAL G +V I+ +
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDK 178
Score = 35.1 bits (77), Expect = 1.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 502 PTFKVNDSIQLDIATTKIMDFIKFESGNLCMI 597
P K+ D+++ D+ KI +F ESGN+C I
Sbjct: 264 PEIKIGDTLKYDLVNNKIENFAHLESGNVCYI 295
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 115 bits (276), Expect = 1e-24
Identities = 52/67 (77%), Positives = 57/67 (85%)
Frame = +3
Query: 51 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 231 VLKIVKQ 251
V KI Q
Sbjct: 61 VKKIRMQ 67
Score = 91.5 bits (217), Expect = 2e-17
Identities = 44/96 (45%), Positives = 55/96 (57%)
Frame = +2
Query: 359 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*T 538
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPL K
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 539 LQLRRLWTSSSLSPGTCV*SREAVTWGAVGTIVSRE 646
L+ ++ G G +G I +RE
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRE 171
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 114 bits (274), Expect = 2e-24
Identities = 49/84 (58%), Positives = 63/84 (75%)
Frame = +2
Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 433
L+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V +
Sbjct: 83 LVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQ 142
Query: 434 VATGPKNVPYLVTHDGRTIRYPDP 505
G K +P++VTHDGRTI Y DP
Sbjct: 143 FKIGAKGIPHVVTHDGRTISYVDP 166
Score = 92.3 bits (219), Expect = 9e-18
Identities = 43/68 (63%), Positives = 50/68 (73%)
Frame = +3
Query: 51 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E
Sbjct: 15 MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKE 74
Query: 231 VLKIVKQR 254
+ IVK+R
Sbjct: 75 AVAIVKRR 82
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 98.7 bits (235), Expect = 1e-19
Identities = 47/84 (55%), Positives = 55/84 (65%)
Frame = +2
Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 433
L+ VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV
Sbjct: 66 LVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVN 125
Query: 434 VATGPKNVPYLVTHDGRTIRYPDP 505
+ T VP VTHDG IRYPDP
Sbjct: 126 LYTATGRVPVAVTHDGHRIRYPDP 149
Score = 96.3 bits (229), Expect = 6e-19
Identities = 43/62 (69%), Positives = 49/62 (79%)
Frame = +3
Query: 66 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 245
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 246 KQ 251
+Q
Sbjct: 63 RQ 64
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 86.6 bits (205), Expect = 5e-16
Identities = 41/83 (49%), Positives = 59/83 (71%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV +
Sbjct: 70 IKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKK 129
Query: 437 ATGPKNVPYLVTHDGRTIRYPDP 505
+ +PY+V+ G +IR+ DP
Sbjct: 130 YEN-QGIPYIVSSCGLSIRFCDP 151
Score = 70.1 bits (164), Expect = 4e-11
Identities = 31/69 (44%), Positives = 44/69 (63%)
Frame = +3
Query: 51 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 231 VLKIVKQRS 257
+ I+ +++
Sbjct: 61 LSIILAEKN 69
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 65.7 bits (153), Expect = 9e-10
Identities = 29/64 (45%), Positives = 41/64 (64%)
Frame = +3
Query: 57 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 236
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 237 KIVK 248
KI++
Sbjct: 64 KIIQ 67
Score = 49.6 bits (113), Expect = 6e-05
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +2
Query: 245 ETTLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 424
+T I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK
Sbjct: 67 QTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCK 124
Query: 425 V--KRVATGPKNVPYLVTHDGR 484
+ K V G N+ L HDGR
Sbjct: 125 IVNKTVVKG-GNI-QLNLHDGR 144
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +3
Query: 60 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 236
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 237 KIV 245
KI+
Sbjct: 67 KII 69
Score = 58.8 bits (136), Expect = 1e-07
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K
Sbjct: 74 IYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNK 133
Query: 437 ATGPKNVPYLVTHDGRT--IRYPDP 505
+ HDG+ + DP
Sbjct: 134 TYVRGGNLQITMHDGKNWLVEIEDP 158
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 62.9 bits (146), Expect = 6e-09
Identities = 30/78 (38%), Positives = 47/78 (60%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
+ VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+
Sbjct: 71 VLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNK 128
Query: 437 ATGPKNVPYLVTHDGRTI 490
+T + HDG+ +
Sbjct: 129 STIKGGKIQVNLHDGKNV 146
Score = 47.2 bits (107), Expect = 3e-04
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 60 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 239
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 240 IV 245
I+
Sbjct: 65 II 66
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 62.9 bits (146), Expect = 6e-09
Identities = 34/87 (39%), Positives = 46/87 (52%)
Frame = +2
Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 433
L+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+
Sbjct: 65 LVKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRS 122
Query: 434 VATGPKNVPYLVTHDGRTIRYPDPLSK 514
P N L THDGRT D K
Sbjct: 123 KVIAPGNRIQLGTHDGRTFITDDKSKK 149
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 59.3 bits (137), Expect = 8e-08
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +2
Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VK 430
++KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K VK
Sbjct: 66 MVKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVK 125
Query: 431 RVATGPKNVPYLVTHDGRTI 490
+ G + L HDG+TI
Sbjct: 126 KTIIGTGKI-QLGFHDGKTI 144
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 59.3 bits (137), Expect = 8e-08
Identities = 29/79 (36%), Positives = 43/79 (54%)
Frame = +2
Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 433
+I+VDG+V TD +P G MDV+ I + +R++ D + I PEEA YKL +++R
Sbjct: 72 VIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRR 131
Query: 434 VATGPKNVPYLVTHDGRTI 490
T HDGR +
Sbjct: 132 KMTVKNGDLQFTLHDGRNV 150
Score = 50.0 bits (114), Expect = 5e-05
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +3
Query: 42 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 221
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 222 GNEVLKIVKQR 254
E +I+ R
Sbjct: 61 MKEARRILASR 71
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 59.3 bits (137), Expect = 8e-08
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
+ VDGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++
Sbjct: 65 VLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNK 124
Query: 437 ATGPKNVPYLVTHDGRTIRYP-DPLSKSTIPSS*TLQL 547
T V L DGR I + LS+ +P+ TL++
Sbjct: 125 TTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKI 162
Score = 37.5 bits (83), Expect = 0.28
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 72 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 245
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRII 60
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 58.8 bits (136), Expect = 1e-07
Identities = 31/78 (39%), Positives = 40/78 (51%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 65 VKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDK 124
Query: 437 ATGPKNVPYLVTHDGRTI 490
L HDGR I
Sbjct: 125 TMVKAGKIQLNLHDGRNI 142
Score = 48.0 bits (109), Expect = 2e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 72 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 245
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLII 60
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 57.2 bits (132), Expect = 3e-07
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +2
Query: 260 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRV 436
+VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE K +++
Sbjct: 72 RVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENK 130
Query: 437 ATGPKNVPYLVTHDGRTI--RYPDP 505
T L HDGR I R DP
Sbjct: 131 TTVKGGHVQLNLHDGRNILVRVKDP 155
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +3
Query: 51 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 227
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 228 EVLKIVKQ 251
E K++ +
Sbjct: 61 EARKLISE 68
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 55.6 bits (128), Expect = 1e-06
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 72 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 248
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 249 Q 251
+
Sbjct: 63 R 63
Score = 55.2 bits (127), Expect = 1e-06
Identities = 29/78 (37%), Positives = 42/78 (53%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
+KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V+
Sbjct: 66 VKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGK 125
Query: 437 ATGPKNVPYLVTHDGRTI 490
L HDGR +
Sbjct: 126 TMVKGGRIQLHFHDGRNL 143
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 53.2 bits (122), Expect = 5e-06
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKR 433
+ VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K K +++
Sbjct: 71 VLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRK 130
Query: 434 VATGPKNVPYLVTHDGRT 487
V+ + Y +T DGRT
Sbjct: 131 VSVRGGKIQYTLT-DGRT 147
Score = 41.5 bits (93), Expect = 0.017
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 66 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 233
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREV 62
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 50.4 bits (115), Expect = 4e-05
Identities = 29/85 (34%), Positives = 43/85 (50%)
Frame = +2
Query: 248 TTLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 427
T + VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V
Sbjct: 64 TRQVLVDGRIETDLGRGVGLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRV 121
Query: 428 KRVATGPKNVPYLVTHDGRTIRYPD 502
+T + HDGR I D
Sbjct: 122 MGKSTITDGKTQIHLHDGRNILVSD 146
Score = 44.0 bits (99), Expect = 0.003
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 72 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 251
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 252 R 254
R
Sbjct: 65 R 65
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 49.6 bits (113), Expect = 6e-05
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++
Sbjct: 65 VLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNK 123
Query: 437 ATGPKNVPYLVTHDGRTI 490
T L +DG I
Sbjct: 124 TTVKGGKIQLNLNDGTNI 141
Score = 41.5 bits (93), Expect = 0.017
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +3
Query: 72 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 251
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
+ VDGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 67 VLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNK 124
Query: 437 ATGPKNVPYLVTHDGRTI 490
L HDG T+
Sbjct: 125 TALRGGKIQLNLHDGTTM 142
Score = 46.8 bits (106), Expect = 5e-04
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 72 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 251
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +3
Query: 78 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 254
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDR 62
Score = 36.7 bits (81), Expect = 0.48
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Frame = +2
Query: 86 KRSQSMDVGQTWRCVCTETVNRS--PQVARVLAPGDFPEESSEVCFDRKRSPENCETTLI 259
KR + D Q R V+ S P L G + + + + K + +
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHDGSALPIGIWLRDHMQFALNTKEVRKILHDRQV 64
Query: 260 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 439
++G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV
Sbjct: 65 LLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKT 124
Query: 440 T 442
T
Sbjct: 125 T 125
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
+ V+G+ D G D+VSI K + +R+ DVKG I E AK +LCK++
Sbjct: 65 VLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNK 124
Query: 437 AT 442
T
Sbjct: 125 TT 126
Score = 43.2 bits (97), Expect = 0.006
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +3
Query: 69 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 248
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 249 QR 254
QR
Sbjct: 62 QR 63
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 42.7 bits (96), Expect = 0.007
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 430
+ VDG R D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 66 VLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Score = 39.9 bits (89), Expect = 0.052
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 72 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 206
H KR++ PK+W + K + GPH + +PL + LR+ L
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 40.7 bits (91), Expect = 0.030
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
+ ++GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 65 VLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTK 124
Query: 437 ATGPKNVPYLVTHDGRTIRYPD 502
L HDG T+ D
Sbjct: 125 THVSGGDVQLGLHDGETLIVED 146
Score = 37.1 bits (82), Expect = 0.36
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 72 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 215
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYA 50
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 37.5 bits (83), Expect = 0.28
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
++VDG RT + G MDVV + T +++R++ +I E K+C+V
Sbjct: 71 VEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRVTSK 130
Query: 437 ATGPKNVPYLVTHDGRTI 490
+ + HDGR++
Sbjct: 131 TSISGGRTQIGFHDGRSL 148
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 37.5 bits (83), Expect = 0.28
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +3
Query: 51 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 231 VLKIVK 248
K+VK
Sbjct: 61 AQKVVK 66
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 35.1 bits (77), Expect = 1.5
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 183 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSI 37
PG RAT GD + VSV T+R PTS+ W ++ N G P +I
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140
>UniRef50_Q8U0H1 Cluster: ATP-binding protein phnp; n=4;
Thermococcaceae|Rep: ATP-binding protein phnp -
Pyrococcus furiosus
Length = 249
Score = 34.7 bits (76), Expect = 1.9
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +2
Query: 197 ESSEVCFDRKRSPENCETTLIKVDGKVRT---DPTYPAGFMDVVSIEKTNELFRLIYDVK 367
+S + +D K P L+K+ VRT D TYP GFMD +E + D+
Sbjct: 151 KSVAILYDTKGLPSETREYLLKIS-PVRTAIVDATYPPGFMDPYH-NNVDEAVEMSIDIA 208
Query: 368 GRFTIHRITPEEAKY-KLCKVKRVATGPK 451
R + I+ + + KL K R G K
Sbjct: 209 ERVVLSHISHKNLPFLKLVKYTRKKWGGK 237
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 34.7 bits (76), Expect = 1.9
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = +2
Query: 251 TLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 430
+L+ VDGKV + GFMD +++ + L + YD KG+ I E KL +VK
Sbjct: 64 SLVMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVK 121
Query: 431 RVATGPKNVPYLVTHDGRTI 490
+ HDG T+
Sbjct: 122 GKTYVKGGRIQISFHDGSTM 141
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.5 bits (73), Expect = 4.5
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 238 FRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 68
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 67 LGPRAML 47
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 33.1 bits (72), Expect = 5.9
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKG 370
+KV+ K + DPT+P D SIE +++ L+ + KG
Sbjct: 136 VKVEHKKQLDPTFPRNDFDKFSIEDMDQVLNLLSNYKG 173
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,850,604
Number of Sequences: 1657284
Number of extensions: 14150004
Number of successful extensions: 38461
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38439
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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