Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0083
         (647 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3LX03 Cluster: Envelope glycoprotein; n=1; Human immun...    36   1.1  
UniRef50_A7IZE7 Cluster: PHO1-2; n=1; Physcomitrella patens|Rep:...    34   3.4  
UniRef50_A2Q136 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_A0BZV3 Cluster: Chromosome undetermined scaffold_14, wh...    33   4.5  
UniRef50_Q33559 Cluster: MURF1 protein; n=7; Eukaryota|Rep: MURF...    33   6.0  

>UniRef50_Q3LX03 Cluster: Envelope glycoprotein; n=1; Human
           immunodeficiency virus 1|Rep: Envelope glycoprotein -
           Human immunodeficiency virus 1
          Length = 137

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 641 TSKKCIVYLTMPFANQHDFCILTRSIR*YLMYFYLMHKKLTIILHINCV 495
           T  +C +   +P++N   +CIL R  R Y    YL  +  +I +H +C+
Sbjct: 88  TRGRCKISKALPYSNNKIYCILRRGPRNYNTSLYLSGENFSIAIHQSCL 136


>UniRef50_A7IZE7 Cluster: PHO1-2; n=1; Physcomitrella patens|Rep:
           PHO1-2 - Physcomitrella patens (Moss)
          Length = 832

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = -2

Query: 430 NAYEFFSVIQK--KSFWESIGSVQLNRHSEYYKIIFTKVSQQFTRIRIIGNDIYCNTQKM 257
           N   F  +++K  K+  + +GSV L      Y I   K+S+   R+     DI+  +   
Sbjct: 354 NLVAFAKIMKKYDKAVKQRLGSVYLKEVERSYFITSNKISKIMVRVE----DIFTQSFSS 409

Query: 256 QNRTKLDGQLKSQRQ-DEH 203
           Q+R K   QL+ QRQ  EH
Sbjct: 410 QDRQKAMAQLRPQRQHSEH 428


>UniRef50_A2Q136 Cluster: Putative uncharacterized protein; n=1;
            Medicago truncatula|Rep: Putative uncharacterized protein
            - Medicago truncatula (Barrel medic)
          Length = 1535

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
 Frame = -3

Query: 465  NQYYNCVRLQ*ETPMSSFQ*YKKNPFGRALEASNSIDIRNIIK*FLRKS----------H 316
            NQ  N   L+ +T +SS Q  K + F  ALE +    +RN  +   ++           H
Sbjct: 682  NQRNNTESLRNKTQLSS-QSKKNDCFENALEHNKDESLRNKTQVTSQRKKRDLFENALEH 740

Query: 315  NNSHALGSSAMIFIVTRKKCKIVQNWTDNSSHNGKMSIQQQH*ICSTRLIPSSKTHREQL 136
            N   +L S   I  + ++K    +N  +   HN   S++ +      R+I S KT +   
Sbjct: 741  NEDESLRSKTQISSLKKEKRDCSENALE---HNEDESLRNKG-----RII-SLKTKKRDC 791

Query: 135  RFVALNSN*IETLSITTS*CSLRSNRKSCFVNSL 34
                L  N  E+L   T  CS++  ++ CF N+L
Sbjct: 792  SENGLEHNEDESLRYKTQTCSMKKKKRDCFENAL 825


>UniRef50_A0BZV3 Cluster: Chromosome undetermined scaffold_14, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_14,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 879

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -2

Query: 361 NRHSEYYKIIFTKVSQQFTRIRIIGNDIY---CNTQKMQ-NRTKLDGQLKS 221
           N   +  KIIF K+SQQ +RI+ + +  Y   C  QK+   R KL+  LKS
Sbjct: 537 NELEQQIKIIFEKLSQQRSRIQELDDQSYQQQCQIQKLSVEREKLEKDLKS 587


>UniRef50_Q33559 Cluster: MURF1 protein; n=7; Eukaryota|Rep: MURF1
           protein - Leishmania tarentolae (Sauroleishmania
           tarentolae)
          Length = 443

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -1

Query: 587 FCILTRSIR*YLMYFYLMHKKLTIILHINCVNE*RLRSFFLINTIIVLG-SNEKRL*VLF 411
           FC +   +    +YFY++  KL II  I CV    L SF +++ + VL  +N   L ++F
Sbjct: 217 FCFILIILLICFIYFYIIFIKLIIIQSITCVLI-GLNSFAIVSLLFVLSVNNFSFLFLIF 275

Query: 410 SNTKKIL 390
            +TK  +
Sbjct: 276 ISTKNYI 282


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,566,051
Number of Sequences: 1657284
Number of extensions: 10438906
Number of successful extensions: 19704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19702
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)