Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060138.seq
(686 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B5BD1 Cluster: PREDICTED: similar to RE48840p; ... 62 1e-08
UniRef50_UPI00015B5BA9 Cluster: PREDICTED: similar to RE48840p; ... 62 2e-08
UniRef50_Q9NVP1 Cluster: ATP-dependent RNA helicase DDX18; n=24;... 48 2e-04
UniRef50_Q4RK69 Cluster: Chromosome 2 SCAF15032, whole genome sh... 47 5e-04
UniRef50_UPI00006CA44F Cluster: DEAD/DEAH box helicase family pr... 45 0.002
UniRef50_A5K2E0 Cluster: DEAD/DEAH box ATP-dependent RNA helicas... 44 0.005
UniRef50_Q03532 Cluster: ATP-dependent RNA helicase HAS1; n=70; ... 42 0.014
UniRef50_UPI00015B617E Cluster: PREDICTED: hypothetical protein;... 40 0.043
UniRef50_Q9UTP9 Cluster: ATP-dependent RNA helicase dbp4; n=1; S... 40 0.057
UniRef50_Q0CMM5 Cluster: Putative uncharacterized protein; n=2; ... 38 0.17
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 38 0.17
UniRef50_Q2H2J1 Cluster: ATP-dependent RNA helicase DBP4; n=14; ... 38 0.23
UniRef50_Q9SB89 Cluster: DEAD-box ATP-dependent RNA helicase 27;... 38 0.30
UniRef50_A7S2R2 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 37 0.40
UniRef50_Q4P5U4 Cluster: ATP-dependent RNA helicase DBP4; n=1; U... 37 0.53
UniRef50_A0LD66 Cluster: DEAD/DEAH box helicase domain protein; ... 36 0.70
UniRef50_Q5BYH3 Cluster: SJCHGC05414 protein; n=1; Schistosoma j... 36 0.70
UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13; ... 36 0.70
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 36 1.2
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 35 1.6
UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein; ... 35 1.6
UniRef50_A2D755 Cluster: DEAD/DEAH box helicase family protein; ... 35 1.6
UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4; Ascomy... 35 1.6
UniRef50_Q8SR01 Cluster: ATP-dependent RNA helicase DBP4; n=1; E... 35 1.6
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 35 2.1
UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;... 34 2.8
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 34 2.8
UniRef50_A4S6F2 Cluster: Predicted protein; n=1; Ostreococcus lu... 34 2.8
UniRef50_A2DGJ7 Cluster: DEAD/DEAH box helicase family protein; ... 34 2.8
UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2; C... 34 2.8
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 34 3.7
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 34 3.7
UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5; T... 34 3.7
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 34 3.7
UniRef50_UPI000023DE12 Cluster: hypothetical protein FG05108.1; ... 33 4.9
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 33 4.9
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 33 4.9
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 33 4.9
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 33 4.9
UniRef50_Q5CWJ4 Cluster: Drs1p, eIF4a-1-family RNA SFII helicase... 33 4.9
UniRef50_A2FYU9 Cluster: DEAD/DEAH box helicase family protein; ... 33 4.9
UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 33 4.9
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 33 6.5
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 33 6.5
UniRef50_Q9N478 Cluster: Putative uncharacterized protein; n=2; ... 33 6.5
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.5
UniRef50_Q16XX4 Cluster: DEAD box ATP-dependent RNA helicase; n=... 33 6.5
UniRef50_Q16XX2 Cluster: DEAD box ATP-dependent RNA helicase; n=... 33 6.5
UniRef50_Q16W98 Cluster: DEAD box ATP-dependent RNA helicase; n=... 33 6.5
UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;... 33 6.5
UniRef50_A5DUB2 Cluster: ATP-dependent RNA helicase MAK5; n=5; S... 33 6.5
UniRef50_Q9NY93 Cluster: Probable ATP-dependent RNA helicase DDX... 33 6.5
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|... 33 8.6
UniRef50_A7U5W8 Cluster: DEAD-box helicase 5; n=6; Plasmodium|Re... 33 8.6
>UniRef50_UPI00015B5BD1 Cluster: PREDICTED: similar to RE48840p;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
RE48840p - Nasonia vitripennis
Length = 1378
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/71 (45%), Positives = 43/71 (60%)
Frame = +1
Query: 388 NDLPGSSLCLGILSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVG 567
++LPG+S+ L + D+ F+ L+ VCE TL I +MGF + +GRDLVG
Sbjct: 190 SNLPGTSVGLELTKDRSFSTLKDKVCENTLKAIAEMGFTDMTEIQAMSIPPLLEGRDLVG 249
Query: 568 AAKTGSGKNTS 600
AAKTGSGK S
Sbjct: 250 AAKTGSGKTLS 260
>UniRef50_UPI00015B5BA9 Cluster: PREDICTED: similar to RE48840p;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
RE48840p - Nasonia vitripennis
Length = 1134
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/71 (45%), Positives = 42/71 (59%)
Frame = +1
Query: 388 NDLPGSSLCLGILSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVG 567
+ LPG+S+ L + D+ F+ L+ VCE TL I +MGF + +GRDLVG
Sbjct: 615 SSLPGTSVGLELTKDRSFSTLKDKVCENTLKAIAEMGFTDMTEIQAMSIPPLLEGRDLVG 674
Query: 568 AAKTGSGKNTS 600
AAKTGSGK S
Sbjct: 675 AAKTGSGKTLS 685
>UniRef50_Q9NVP1 Cluster: ATP-dependent RNA helicase DDX18; n=24;
Coelomata|Rep: ATP-dependent RNA helicase DDX18 - Homo
sapiens (Human)
Length = 670
Score = 48.0 bits (109), Expect = 2e-04
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 388 NDLPGSSLCL-GILSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLV 564
+++P L L G D F +L V E TL IK+MGF + K +GRDL+
Sbjct: 161 SEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLL 220
Query: 565 GAAKTGSGK 591
AAKTGSGK
Sbjct: 221 AAAKTGSGK 229
Score = 32.7 bits (71), Expect = 8.6
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +2
Query: 575 KLALGKTLAFLIPGYRPYIQT*NFXPRNGYWSHLLSP 685
K GKTLAFLIP ++ F PRNG +LSP
Sbjct: 224 KTGSGKTLAFLIPAVELIVKL-RFMPRNGTGVLILSP 259
>UniRef50_Q4RK69 Cluster: Chromosome 2 SCAF15032, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 2 SCAF15032, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 574
Score = 46.8 bits (106), Expect = 5e-04
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +1
Query: 418 GILSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
G D F +L V E TL G+K++GF + K +GRD++ AAKTGSGK
Sbjct: 54 GAFEDTSFASLAELVSENTLKGVKELGFEHMTEIQHKTIRPLLEGRDVLAAAKTGSGK 111
>UniRef50_UPI00006CA44F Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 642
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/58 (43%), Positives = 32/58 (55%)
Frame = +1
Query: 418 GILSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
G S+ F LE VC+PT +K M F + + KGRD++GAAKTGSGK
Sbjct: 146 GFFSNDLFDDLE--VCKPTKDALKQMKFTNMTHIQSRTIPHLLKGRDVLGAAKTGSGK 201
>UniRef50_A5K2E0 Cluster: DEAD/DEAH box ATP-dependent RNA helicase,
putative; n=4; Plasmodium|Rep: DEAD/DEAH box
ATP-dependent RNA helicase, putative - Plasmodium vivax
Length = 599
Score = 43.6 bits (98), Expect = 0.005
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +1
Query: 427 SDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
S KF L+ +CE G+K++ F+T + K G+D++GAAKTGSGK
Sbjct: 144 SQTKFEDLD--ICEALKKGLKELNFVTLTEIQAKCIPHFLNGKDILGAAKTGSGK 196
>UniRef50_Q03532 Cluster: ATP-dependent RNA helicase HAS1; n=70;
Eukaryota|Rep: ATP-dependent RNA helicase HAS1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 505
Score = 41.9 bits (94), Expect = 0.014
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 433 QKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+KF L+ + +PTL I+ MGF T + + GRD++GAAKTGSGK
Sbjct: 42 EKFEELK--LSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGK 92
>UniRef50_UPI00015B617E Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 782
Score = 40.3 bits (90), Expect = 0.043
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +1
Query: 433 QKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
QKFT L ++ TL G+KD +I + + L KG D++GAAKTGSGK
Sbjct: 41 QKFTDLPLSM--QTLKGLKDSEYIDLTDIQRQSIGLALKGNDILGAAKTGSGK 91
>UniRef50_Q9UTP9 Cluster: ATP-dependent RNA helicase dbp4; n=1;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase dbp4 - Schizosaccharomyces pombe (Fission
yeast)
Length = 735
Score = 39.9 bits (89), Expect = 0.057
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+PT +K+ FIT + + KGRD++GAAKTGSGK
Sbjct: 48 QPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGK 89
>UniRef50_Q0CMM5 Cluster: Putative uncharacterized protein; n=2;
Pezizomycotina|Rep: Putative uncharacterized protein -
Aspergillus terreus (strain NIH 2624)
Length = 729
Score = 38.3 bits (85), Expect = 0.17
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
EPTL G+ + T + + KGRD++GAAKTGSGK
Sbjct: 55 EPTLSGLSASHYKTLTDIQSRAVSHALKGRDILGAAKTGSGK 96
>UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase drs1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 754
Score = 38.3 bits (85), Expect = 0.17
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 469 PTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
P L G+ ++GF + + K L G+D+VGAA TGSGK +
Sbjct: 269 PILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAA 312
>UniRef50_Q2H2J1 Cluster: ATP-dependent RNA helicase DBP4; n=14;
Pezizomycotina|Rep: ATP-dependent RNA helicase DBP4 -
Chaetomium globosum (Soil fungus)
Length = 825
Score = 37.9 bits (84), Expect = 0.23
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +1
Query: 433 QKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
++FT L +CE T G++ F + L KGRD++GAAKTGSGK
Sbjct: 53 KQFTDLP--LCEATASGLRASHFEVLTDVQRAAIPLALKGRDILGAAKTGSGK 103
>UniRef50_Q9SB89 Cluster: DEAD-box ATP-dependent RNA helicase 27;
n=1; Arabidopsis thaliana|Rep: DEAD-box ATP-dependent
RNA helicase 27 - Arabidopsis thaliana (Mouse-ear cress)
Length = 633
Score = 37.5 bits (83), Expect = 0.30
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +1
Query: 421 ILSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
I++++ F +L ++ + T IK+MGF + + K G D++GAA+TGSGK
Sbjct: 150 IMTNKTFESL--SLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGK 204
>UniRef50_A7S2R2 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 643
Score = 37.1 bits (82), Expect = 0.40
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +1
Query: 460 VCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+ + TL G+ GF+T + + + GRD++GAAKTGSGK
Sbjct: 57 ISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGK 100
>UniRef50_Q4P5U4 Cluster: ATP-dependent RNA helicase DBP4; n=1;
Ustilago maydis|Rep: ATP-dependent RNA helicase DBP4 -
Ustilago maydis (Smut fungus)
Length = 869
Score = 36.7 bits (81), Expect = 0.53
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +1
Query: 433 QKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
++FT L + + T G+K G+ + K L KG+D++GAA+TGSGK
Sbjct: 58 KQFTQLP--LSDRTCRGLKRAGYTDMTDIQAKSLSLSLKGKDVLGAARTGSGK 108
>UniRef50_A0LD66 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Magnetococcus sp. MC-1|Rep: DEAD/DEAH box helicase
domain protein - Magnetococcus sp. (strain MC-1)
Length = 572
Score = 36.3 bits (80), Expect = 0.70
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 436 KFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+FT L + EP L GI+D GF + L G+D+ G A+TG+GK +
Sbjct: 2 EFTELP--IPEPVLAGIRDCGFTQCTPIQALTLPLALAGKDVAGQAQTGTGKTAA 54
>UniRef50_Q5BYH3 Cluster: SJCHGC05414 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC05414 protein - Schistosoma
japonicum (Blood fluke)
Length = 325
Score = 36.3 bits (80), Expect = 0.70
Identities = 27/65 (41%), Positives = 34/65 (52%)
Frame = +1
Query: 397 PGSSLCLGILSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAK 576
PG+S+ ILS KF L + EP IKDMGF + K + RD++ AK
Sbjct: 42 PGTSI---ILSG-KFEDLP--ISEPVKRAIKDMGFTHMTDIQNKCIPQLLEHRDIMACAK 95
Query: 577 TGSGK 591
TGSGK
Sbjct: 96 TGSGK 100
>UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13;
Saccharomycetales|Rep: ATP-dependent RNA helicase DBP4 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 770
Score = 36.3 bits (80), Expect = 0.70
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 460 VCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+ +PTL G+++ FI + + +G D++ AAKTGSGK
Sbjct: 48 ISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGK 91
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 35.5 bits (78), Expect = 1.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
E L IKDMGF + + + + +G D++G A+TG+GK +
Sbjct: 13 ESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAA 57
>UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DEAH
box helicase-like; n=1; Clostridium phytofermentans
ISDg|Rep: Helicase-like:DbpA, RNA-binding:DEAD/DEAH box
helicase-like - Clostridium phytofermentans ISDg
Length = 483
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 430 DQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
D KFT + +CE + + + +I + K+ L +G+D++ +KTGSGK +
Sbjct: 3 DNKFTQYK--LCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAA 57
>UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein;
n=7; Flavobacteria|Rep: DEAD/DEAH box helicase domain
protein - Flavobacterium johnsoniae UW101
Length = 450
Score = 35.1 bits (77), Expect = 1.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 484 IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+ ++GF+T + K + + GRD++G A+TG+GK
Sbjct: 17 VDELGFVTPTPIQEKSFSVIMSGRDMMGIAQTGTGK 52
>UniRef50_A2D755 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 1123
Score = 35.1 bits (77), Expect = 1.6
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
E TL IK + + + + + GRDL+G AKTGSGK S
Sbjct: 751 ENTLSNIKKLEYTQPTDIQKIAIPIAYAGRDLIGIAKTGSGKTAS 795
>UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4;
Ascomycota|Rep: 2-isopropylmalate synthase - Ajellomyces
capsulatus NAm1
Length = 1466
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 457 TVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
++ P L G+ +GF T + K + G+D+VG A TGSGK
Sbjct: 311 SLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGK 355
>UniRef50_Q8SR01 Cluster: ATP-dependent RNA helicase DBP4; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
DBP4 - Encephalitozoon cuniculi
Length = 452
Score = 35.1 bits (77), Expect = 1.6
Identities = 11/37 (29%), Positives = 27/37 (72%)
Frame = +1
Query: 481 GIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
G+++ GF++ + + K+ + +G D++G+++TG+GK
Sbjct: 18 GLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGK 54
>UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;
Fungi/Metazoa group|Rep: ATP-dependent RNA helicase
drs-1 - Neurospora crassa
Length = 829
Score = 34.7 bits (76), Expect = 2.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 451 EGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
E ++ P L G+ +GF + K + G+D+VG A TGSGK +
Sbjct: 297 EMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAA 346
>UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG5800-PA - Tribolium castaneum
Length = 770
Score = 34.3 bits (75), Expect = 2.8
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 472 TLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
TL G+K+ G+ + + L G+D++GAA+TGSGK
Sbjct: 62 TLKGLKECGYTKPTDIQRETIKLGLTGKDILGAAQTGSGK 101
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 34.3 bits (75), Expect = 2.8
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1
Query: 424 LSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+++ K T + + E L + DMGF + + +G+D++G A+TG+GK +
Sbjct: 1 MTETKLTFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAA 59
>UniRef50_A4S6F2 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 394
Score = 34.3 bits (75), Expect = 2.8
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 484 IKDMGFITRQRFKPKLYLLCWKGR-DLVGAAKTGSGK 591
I+D GF T + + L KGR D++GAA+TGSGK
Sbjct: 32 IQDCGFTTPTPIQRECLLPATKGRCDIIGAAQTGSGK 68
>UniRef50_A2DGJ7 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 156
Score = 34.3 bits (75), Expect = 2.8
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = +1
Query: 430 DQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
D FT+L+ VCE + + F + K L +G D+VGAAKTGSGK
Sbjct: 15 DDTFTSLK--VCEGAKGVLTKLPFEKMFPIQKKAIPLLLEGADVVGAAKTGSGK 66
>UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2;
Chaetomium globosum|Rep: ATP-dependent RNA helicase DRS1
- Chaetomium globosum (Soil fungus)
Length = 795
Score = 34.3 bits (75), Expect = 2.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 457 TVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
++ P L G+ +GF + K + G+D+VG A TGSGK +
Sbjct: 282 SLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAA 329
>UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59;
Betaproteobacteria|Rep: ATP-dependent RNA helicase RhlE
- Burkholderia mallei (Pseudomonas mallei)
Length = 482
Score = 33.9 bits (74), Expect = 3.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 475 LLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
L I + G+ T + K + GRD++GAA+TG+GK S
Sbjct: 23 LKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTAS 64
>UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=9; Bacteroidetes/Chlorobi
group|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium limicola DSM 245
Length = 499
Score = 33.9 bits (74), Expect = 3.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 460 VCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+ EP L I++ G+ T + + L G DL+G A+TG+GK +
Sbjct: 89 IIEPILQAIEEEGYQTPTPIQAEAIPLILDGNDLLGCAQTGTGKTAA 135
>UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5;
Trypanosomatidae|Rep: DEAD box RNA helicase, putative -
Leishmania major
Length = 527
Score = 33.9 bits (74), Expect = 3.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 406 SLCLGILSDQKFTAL---EGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAK 576
SL +L D++F A + +C+ D G+ R + + +GRDL+G A+
Sbjct: 39 SLGSELLDDEEFKAKTFQDLGLCQELCAACADAGWQHPTRIQASTITVFAEGRDLIGVAQ 98
Query: 577 TGSGK 591
TGSGK
Sbjct: 99 TGSGK 103
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 33.9 bits (74), Expect = 3.7
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 436 KFTALEGTVCEPTLL-GIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
KFT L T P+++ + +MGF + + L +G+DL+G A+TG+GK +
Sbjct: 3 KFTELNLT---PSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAA 55
>UniRef50_UPI000023DE12 Cluster: hypothetical protein FG05108.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG05108.1 - Gibberella zeae PH-1
Length = 670
Score = 33.5 bits (73), Expect = 4.9
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +1
Query: 436 KFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+F LEG I DMG+ T + K KG D+V AKTG+GK
Sbjct: 76 RFAELEGVDESLIRTIIHDMGYETMTPVQAKTIKPALKGTDIVAQAKTGTGK 127
>UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3;
Deltaproteobacteria|Rep: ATP-dependent RNA helicase -
Bdellovibrio bacteriovorus
Length = 505
Score = 33.5 bits (73), Expect = 4.9
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 469 PTLLGI-KDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
P LL + +++GF T + + L G+D++G AKTGSGK +
Sbjct: 56 PELLTVVQELGFETLTPIQQESIPLLLAGKDIIGQAKTGSGKTAA 100
>UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 432
Score = 33.5 bits (73), Expect = 4.9
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 469 PTLL-GIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
PTLL + + G++ + + L +GRDL+G A+TG+GK S
Sbjct: 16 PTLLRALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTAS 60
>UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=7; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 542
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 460 VCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+ +P L + D G+ + + L GRDL+G A+TG+GK +
Sbjct: 72 LAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAA 118
>UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein;
n=12; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Roseiflexus sp. RS-1
Length = 467
Score = 33.5 bits (73), Expect = 4.9
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 481 GIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
GI+D+G+ T + ++ GRD++G A+TG+GK +
Sbjct: 15 GIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAA 54
>UniRef50_Q5CWJ4 Cluster: Drs1p, eIF4a-1-family RNA SFII helicase;
n=3; Cryptosporidium|Rep: Drs1p, eIF4a-1-family RNA SFII
helicase - Cryptosporidium parvum Iowa II
Length = 573
Score = 33.5 bits (73), Expect = 4.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 469 PTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
P L + D+ F+ + ++ L GRD++ A+TGSGK +
Sbjct: 40 PLLKALSDLNFVEATLIQKEVIPLALSGRDIMAEAETGSGKTAA 83
>UniRef50_A2FYU9 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 633
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 529 LYLLCWKGRDLVGAAKTGSGK 591
LY LC GRD++GAA+TGSGK
Sbjct: 81 LYTLC--GRDIIGAAETGSGK 99
>UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=1; Lodderomyces elongisporus NRRL
YB-4239|Rep: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5 - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 994
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 490 DMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
D+GF + + + GRD++G AKTGSGK S
Sbjct: 405 DLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLS 441
>UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Rhodopirellula baltica
Length = 452
Score = 33.1 bits (72), Expect = 6.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 484 IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+KD GF T + L G+D++G A+TG+GK +
Sbjct: 59 VKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAA 97
>UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12;
Alphaproteobacteria|Rep: ATP-dependent RNA helicase -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 763
Score = 33.1 bits (72), Expect = 6.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
EP I +MG++ + + + GRD++G A+TG+GK S
Sbjct: 232 EPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTAS 276
>UniRef50_Q9N478 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 732
Score = 33.1 bits (72), Expect = 6.5
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 472 TLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTSV 603
TL G+KD + + G D+VGAAKTGSGK ++
Sbjct: 87 TLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLAL 130
>UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 508
Score = 33.1 bits (72), Expect = 6.5
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 424 LSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+SD+ F L T + K +GF + KGRD++ +AKTGSGK S
Sbjct: 1 MSDKTFEELGLTTW--LVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTAS 57
>UniRef50_Q16XX4 Cluster: DEAD box ATP-dependent RNA helicase; n=5;
Neoptera|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 911
Score = 33.1 bits (72), Expect = 6.5
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 451 EGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
EG + + I MGF + + + + GRDLVG A+TGSGK
Sbjct: 233 EGNFPDFVMNEINKMGFPNPTAIQAQGWPIALSGRDLVGIAQTGSGK 279
>UniRef50_Q16XX2 Cluster: DEAD box ATP-dependent RNA helicase; n=2;
Culicidae|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 813
Score = 33.1 bits (72), Expect = 6.5
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 385 NNDLPGSSLCLGILSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKG-RDL 561
N L G + F E V EP + + D GF T + + G RDL
Sbjct: 196 NPTLNGKDTSSDYSGAEYFKWTELGVSEPIVRALADKGFQTPTEIQTLSLPVAIMGKRDL 255
Query: 562 VGAAKTGSGK 591
+GAA+TGSGK
Sbjct: 256 LGAAETGSGK 265
>UniRef50_Q16W98 Cluster: DEAD box ATP-dependent RNA helicase; n=1;
Aedes aegypti|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 784
Score = 33.1 bits (72), Expect = 6.5
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 469 PTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
P L I MG+ + K L +GRD+V AKTGSGK
Sbjct: 48 PILKAILKMGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGK 88
>UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;
n=11; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
30 - Oryza sativa subsp. japonica (Rice)
Length = 666
Score = 33.1 bits (72), Expect = 6.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 484 IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
I GF+ + + + + KGRD++G A+TGSGK S
Sbjct: 266 IAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLS 304
>UniRef50_A5DUB2 Cluster: ATP-dependent RNA helicase MAK5; n=5;
Saccharomycetales|Rep: ATP-dependent RNA helicase MAK5 -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 855
Score = 33.1 bits (72), Expect = 6.5
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 457 TVCEPTLL-GIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
T P +L G+ +M F T + + L +G+D++G A TGSGK
Sbjct: 224 TCLSPYILNGLSNMKFTTPTPIQKRTIPLALEGKDVIGKATTGSGK 269
>UniRef50_Q9NY93 Cluster: Probable ATP-dependent RNA helicase DDX56;
n=25; Theria|Rep: Probable ATP-dependent RNA helicase
DDX56 - Homo sapiens (Human)
Length = 547
Score = 33.1 bits (72), Expect = 6.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 424 LSDQKFTALEGTVCEPTLL-GIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+ D + E +P LL + D+G+ + K L +G+DL+ A+TGSGK +
Sbjct: 1 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 60
>UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila
melanogaster|Rep: GH10652p - Drosophila melanogaster
(Fruit fly)
Length = 818
Score = 32.7 bits (71), Expect = 8.6
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 451 EGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
EG + + I+ GF + + + + GRDLVG A+TGSGK
Sbjct: 161 EGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGK 207
>UniRef50_A7U5W8 Cluster: DEAD-box helicase 5; n=6; Plasmodium|Rep:
DEAD-box helicase 5 - Plasmodium falciparum
Length = 755
Score = 32.7 bits (71), Expect = 8.6
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 481 GIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
GIK M I Q FKP ++G+D++G ++TGSGK
Sbjct: 162 GIKYMTKIQSQSFKP-----IYEGKDIIGRSETGSGK 193
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,107,753
Number of Sequences: 1657284
Number of extensions: 8372032
Number of successful extensions: 20963
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 20077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20861
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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