Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0021
(701 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O75251 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 249 4e-65
UniRef50_Q9DC70 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 247 2e-64
UniRef50_O68853 Cluster: NADH-quinone oxidoreductase subunit B 1... 213 4e-54
UniRef50_A6R2Y3 Cluster: NADH-ubiquinone oxidoreductase 20 kDa s... 199 6e-50
UniRef50_O67334 Cluster: NADH-quinone oxidoreductase chain B; n=... 195 1e-48
UniRef50_Q8A0F5 Cluster: NADH dehydrogenase I, chain B; n=6; Bac... 175 1e-42
UniRef50_P56897 Cluster: NADH-quinone oxidoreductase subunit B 2... 174 2e-42
UniRef50_Q26783 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 174 2e-42
UniRef50_Q1IL91 Cluster: NADH-quinone oxidoreductase, B subunit;... 168 1e-40
UniRef50_Q3ZXS0 Cluster: Proton-translocating NADH-quinone oxido... 167 3e-40
UniRef50_Q1IPE7 Cluster: NADH-quinone oxidoreductase, B subunit;... 165 9e-40
UniRef50_A5UXK1 Cluster: NADH-quinone oxidoreductase, B subunit;... 165 9e-40
UniRef50_Q8KEC2 Cluster: NADH dehydrogenase I, 20 kDa subunit; n... 165 1e-39
UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 163 5e-39
UniRef50_Q9F2W1 Cluster: NADH dehydrogenase subunit NuoB2; n=5; ... 162 9e-39
UniRef50_Q608X8 Cluster: NADH dehydrogenase I, B subunit; n=7; B... 161 1e-38
UniRef50_Q1K3R2 Cluster: NADH-quinone oxidoreductase, B subunit;... 161 1e-38
UniRef50_Q6MIR4 Cluster: NADH dehydrogenase I chain B; n=2; Delt... 157 3e-37
UniRef50_P65576 Cluster: NADH-quinone oxidoreductase subunit B; ... 155 1e-36
UniRef50_A5GIB4 Cluster: NAD(P)H-quinone oxidoreductase subunit ... 154 2e-36
UniRef50_Q9P9G2 Cluster: F420H2 dehydrogenase subunit FpoB; n=6;... 153 3e-36
UniRef50_Q9HRM0 Cluster: NADH dehydrogenase/oxidoreductase; n=6;... 153 5e-36
UniRef50_Q44240 Cluster: NAD(P)H-quinone oxidoreductase subunit ... 153 5e-36
UniRef50_P19050 Cluster: NAD(P)H-quinone oxidoreductase subunit ... 152 9e-36
UniRef50_A3PKI1 Cluster: NADH-quinone oxidoreductase, B subunit;... 149 9e-35
UniRef50_Q9I0K0 Cluster: NADH-quinone oxidoreductase subunit B; ... 148 1e-34
UniRef50_Q67KN6 Cluster: NADH dehydrogenase I subunit B; n=5; Ba... 147 2e-34
UniRef50_Q2S5J2 Cluster: NADH-quinone oxidoreductase chain b; n=... 143 3e-33
UniRef50_A4J659 Cluster: NADH-quinone oxidoreductase, B subunit;... 142 6e-33
UniRef50_Q8F7Q0 Cluster: NADH dehydrogenase I chain B; n=7; Bact... 140 2e-32
UniRef50_A2ZXB2 Cluster: Putative uncharacterized protein; n=2; ... 140 3e-32
UniRef50_A0RY66 Cluster: NADH-ubiquinone oxidoreductase, subunit... 140 3e-32
UniRef50_A7H9V3 Cluster: NADH-quinone oxidoreductase, B subunit;... 136 6e-31
UniRef50_Q8ZU66 Cluster: NADH-ubiquinone oxidoreductase subunit;... 131 2e-29
UniRef50_Q4J8C7 Cluster: NADH:ubiquinone oxidoreductase, B subun... 124 3e-27
UniRef50_O28446 Cluster: F420H2:quinone oxidoreductase, 39.7 kDa... 121 2e-26
UniRef50_A3H7K7 Cluster: NADH-quinone oxidoreductase, B subunit;... 121 2e-26
UniRef50_A0L9R6 Cluster: NADH-quinone oxidoreductase, B subunit;... 119 6e-26
UniRef50_Q2H7B9 Cluster: Putative uncharacterized protein; n=1; ... 117 3e-25
UniRef50_Q9YC23 Cluster: NuoB homolog; n=1; Aeropyrum pernix|Rep... 113 4e-24
UniRef50_A3DKH2 Cluster: NADH-quinone oxidoreductase, B subunit;... 109 5e-23
UniRef50_Q9V0R6 Cluster: NADH ubiquinone oxidoreductase subunit;... 106 6e-22
UniRef50_Q9V0S7 Cluster: NuoB NADH dehydrogenase I, subunit B; n... 105 1e-21
UniRef50_A6Q8J4 Cluster: NADH-quinone oxidoreductase, chain B; n... 104 2e-21
UniRef50_A6DBV2 Cluster: NADH:ubiquinone oxidoreductase 20 kD su... 102 1e-20
UniRef50_UPI00015BB165 Cluster: NADH-quinone oxidoreductase, B s... 99 5e-20
UniRef50_A1ALK4 Cluster: NADH-quinone oxidoreductase, B subunit;... 99 9e-20
UniRef50_Q89GK1 Cluster: HycG protein; n=14; Proteobacteria|Rep:... 98 2e-19
UniRef50_Q609U0 Cluster: Hydrogenase subunit; n=2; Proteobacteri... 97 4e-19
UniRef50_A0UXP2 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 97 4e-19
UniRef50_Q0W3I3 Cluster: Ech hydrogenase, subunit C; n=6; cellul... 96 6e-19
UniRef50_A3DM92 Cluster: NADH-quinone oxidoreductase, B subunit;... 96 6e-19
UniRef50_Q9X0U1 Cluster: NADH dehydrogenase, putative; n=4; Ther... 96 8e-19
UniRef50_Q0W2C0 Cluster: Hydrogenase, small subunit-like protein... 95 2e-18
UniRef50_Q8PY02 Cluster: Formate hydrogenlyase subunit 7; n=3; M... 94 3e-18
UniRef50_Q7M874 Cluster: HYDROGENASE-Ni,Fe-hydrogenase III small... 93 6e-18
UniRef50_A1ASR2 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 93 6e-18
UniRef50_P16433 Cluster: Formate hydrogenlyase subunit 7; n=57; ... 93 6e-18
UniRef50_A1RWL1 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 92 1e-17
UniRef50_A5FR05 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 91 2e-17
UniRef50_Q57936 Cluster: Uncharacterized protein MJ0516; n=15; E... 91 2e-17
UniRef50_Q0W6T1 Cluster: [NiFe]-hydrogenase, small subunit; n=1;... 90 6e-17
UniRef50_Q7WT80 Cluster: EchC; n=2; Deltaproteobacteria|Rep: Ech... 89 1e-16
UniRef50_A7CX02 Cluster: NADH ubiquinone oxidoreductase 20 kDa s... 89 1e-16
UniRef50_A6Q6W5 Cluster: Ni-Fe hydrogenase, small subunit HycG; ... 88 2e-16
UniRef50_A5FPI3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 87 3e-16
UniRef50_Q9UYN6 Cluster: Hydrogenase 4, component I or formate h... 86 7e-16
UniRef50_P72317 Cluster: CooL; n=8; Bacteria|Rep: CooL - Rhodosp... 86 9e-16
UniRef50_Q58758 Cluster: Uncharacterized protein MJ1363; n=9; Eu... 86 9e-16
UniRef50_A6DB47 Cluster: HYDROGENASE-Ni,Fe-hydrogenase III small... 85 2e-15
UniRef50_A5FW47 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 84 3e-15
UniRef50_Q12F15 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 84 4e-15
UniRef50_A7BSF1 Cluster: NADH-plastoquinone oxidoreductase subun... 83 8e-15
UniRef50_Q24ST9 Cluster: Formate hydrogenlyase subunit 7; n=2; D... 80 5e-14
UniRef50_A2YHL1 Cluster: Putative uncharacterized protein; n=2; ... 78 2e-13
UniRef50_A4YGN5 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 78 2e-13
UniRef50_A7HGW9 Cluster: NADH ubiquinone oxidoreductase 20 kDa s... 77 3e-13
UniRef50_A1SQ82 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 77 3e-13
UniRef50_Q21TB3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 75 2e-12
UniRef50_UPI0000E81815 Cluster: PREDICTED: hypothetical protein;... 73 7e-12
UniRef50_Q978D5 Cluster: Formate hydrogenlyase subunit 2; n=2; T... 69 8e-11
UniRef50_A5FW77 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 65 2e-09
UniRef50_Q0BPG7 Cluster: Formate hydrogenlyase subunit 7; n=1; G... 63 6e-09
UniRef50_A6DAC3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 60 4e-08
UniRef50_A3ETD3 Cluster: Ni,Fe-hydrogenase III small subunit; n=... 60 5e-08
UniRef50_UPI00015BC86C Cluster: UPI00015BC86C related cluster; n... 59 9e-08
UniRef50_Q6L0U2 Cluster: Formate hydrogenlyase subunit 7; n=3; c... 59 9e-08
UniRef50_A2XI26 Cluster: Putative uncharacterized protein; n=3; ... 53 8e-06
UniRef50_A0LSU0 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 51 2e-05
UniRef50_Q5FU78 Cluster: Putative uncharacterized protein; n=1; ... 51 3e-05
UniRef50_Q6A6I9 Cluster: NADH dehydrogenase subunit; n=1; Propio... 43 0.008
UniRef50_A7QEP9 Cluster: Chromosome chr16 scaffold_86, whole gen... 38 0.32
UniRef50_Q6XQK2 Cluster: HoxY; n=5; Proteobacteria|Rep: HoxY - T... 37 0.55
UniRef50_Q44515 Cluster: Hydrogenase small subunit; n=31; Bacter... 36 1.3
UniRef50_A0LLU1 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 36 1.3
UniRef50_Q59113 Cluster: Hydrogenase small beta subunit; n=1; Ac... 35 1.7
UniRef50_Q0FXV5 Cluster: Putative uncharacterized protein; n=1; ... 35 2.2
UniRef50_Q85WY3 Cluster: ORF82a; n=1; Pinus koraiensis|Rep: ORF8... 34 3.9
UniRef50_A7S1C1 Cluster: Predicted protein; n=1; Nematostella ve... 34 3.9
UniRef50_Q8ZL73 Cluster: Putative cytoplasmic protein; n=10; cel... 33 5.1
UniRef50_A5UWN9 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 33 6.8
UniRef50_Q2H944 Cluster: Putative uncharacterized protein; n=1; ... 33 6.8
UniRef50_A5Z5F5 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
>UniRef50_O75251 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor; n=9;
Catarrhini|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor - Homo
sapiens (Human)
Length = 213
Score = 249 bits (610), Expect = 4e-65
Identities = 112/144 (77%), Positives = 124/144 (86%)
Frame = +2
Query: 269 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 448
S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ
Sbjct: 57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 116
Query: 449 SDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPV 628
SDVMIVAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN CDRIVPV
Sbjct: 117 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 176
Query: 629 DIYVPGCPPTAEALLYGVLQLQKK 700
DIY+PGCPPTAEALLYG+LQLQ+K
Sbjct: 177 DIYIPGCPPTAEALLYGILQLQRK 200
>UniRef50_Q9DC70 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor; n=117;
cellular organisms|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor - Mus
musculus (Mouse)
Length = 224
Score = 247 bits (605), Expect = 2e-64
Identities = 111/141 (78%), Positives = 122/141 (86%)
Frame = +2
Query: 278 AEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDV 457
AE V +LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ+DV
Sbjct: 71 AEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADV 130
Query: 458 MIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIY 637
MIVAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN CDRIVPVDIY
Sbjct: 131 MIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 190
Query: 638 VPGCPPTAEALLYGVLQLQKK 700
VPGCPPTAEALLYG+LQLQ+K
Sbjct: 191 VPGCPPTAEALLYGILQLQRK 211
>UniRef50_O68853 Cluster: NADH-quinone oxidoreductase subunit B 1;
n=215; cellular organisms|Rep: NADH-quinone
oxidoreductase subunit B 1 - Rhizobium meliloti
(Sinorhizobium meliloti)
Length = 192
Score = 213 bits (520), Expect = 4e-54
Identities = 100/137 (72%), Positives = 109/137 (79%)
Frame = +2
Query: 290 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 469
V D+L+NW R GSL MTFGLACCAVEMM ++ PRYD +R+G RASPRQSDVMIVA
Sbjct: 47 VTSTDELINWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVA 106
Query: 470 GTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 649
GTLTNKMAPALRKVYDQMP+PR+VISMGSCAN CDR+VPVDIYVPGC
Sbjct: 107 GTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGC 166
Query: 650 PPTAEALLYGVLQLQKK 700
PPTAEALLYGVL LQKK
Sbjct: 167 PPTAEALLYGVLLLQKK 183
>UniRef50_A6R2Y3 Cluster: NADH-ubiquinone oxidoreductase 20 kDa
subunit, mitochondrial; n=1; Ajellomyces capsulatus
NAm1|Rep: NADH-ubiquinone oxidoreductase 20 kDa subunit,
mitochondrial - Ajellomyces capsulatus NAm1
Length = 242
Score = 199 bits (485), Expect = 6e-50
Identities = 86/134 (64%), Positives = 105/134 (78%)
Frame = +2
Query: 299 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 478
+D + NW R+GSLWP++ GLACC VEMM ++ PRYD DR G +FRASPRQSD++IVAGT+
Sbjct: 95 IDAVTNWARQGSLWPVSLGLACCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTV 154
Query: 479 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPT 658
TNKMAPALR VYDQMPDP+WVISMGSCAN DR++PVD+++PGCPPT
Sbjct: 155 TNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPT 214
Query: 659 AEALLYGVLQLQKK 700
AEALLY + L+KK
Sbjct: 215 AEALLYAMAVLRKK 228
>UniRef50_O67334 Cluster: NADH-quinone oxidoreductase chain B; n=2;
Aquifex aeolicus|Rep: NADH-quinone oxidoreductase chain
B - Aquifex aeolicus
Length = 179
Score = 195 bits (475), Expect = 1e-48
Identities = 83/145 (57%), Positives = 108/145 (74%)
Frame = +2
Query: 266 ASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPR 445
A N +++LL WGR+ SLWP+T GLACCA+EMMH AA R+D+DR GV+FRASPR
Sbjct: 3 AINSNGFVTTTVEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPR 62
Query: 446 QSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVP 625
Q+DV+IVAGT+ NK+AP L+ ++DQMPDP+W ISMG CA+ DRI+P
Sbjct: 63 QADVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCAS-AGGPFPTYSTLQGVDRIIP 121
Query: 626 VDIYVPGCPPTAEALLYGVLQLQKK 700
VD+Y+PGCPPT + L+YG+LQLQ+K
Sbjct: 122 VDVYIPGCPPTPQGLIYGILQLQRK 146
>UniRef50_Q8A0F5 Cluster: NADH dehydrogenase I, chain B; n=6;
Bacteroides|Rep: NADH dehydrogenase I, chain B -
Bacteroides thetaiotaomicron
Length = 197
Score = 175 bits (425), Expect = 1e-42
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 1/142 (0%)
Frame = +2
Query: 278 AEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSD 454
A + + LDDL+NWGR SLWP+TF +CC +E M + A RYDM R+G V RASPRQ+D
Sbjct: 35 ANVFLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQAD 94
Query: 455 VMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDI 634
+++V GT+TNKMAP L+++YDQMPDP++V+++G CA D+I+PVD+
Sbjct: 95 MIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVLNGVDKILPVDV 154
Query: 635 YVPGCPPTAEALLYGVLQLQKK 700
Y+PGCPP EA YG++QLQ+K
Sbjct: 155 YIPGCPPRPEAFYYGMMQLQRK 176
>UniRef50_P56897 Cluster: NADH-quinone oxidoreductase subunit B 2;
n=43; cellular organisms|Rep: NADH-quinone
oxidoreductase subunit B 2 - Rhizobium meliloti
(Sinorhizobium meliloti)
Length = 167
Score = 174 bits (424), Expect = 2e-42
Identities = 74/133 (55%), Positives = 98/133 (73%)
Frame = +2
Query: 302 DDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLT 481
D +++W R+ +LWP TFG+ACCA+EM+ RYD+DR+GVVFR SPRQSDVMI+AGT+T
Sbjct: 18 DSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMIIAGTVT 77
Query: 482 NKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTA 661
K AP +R++YDQMP+PRWVI+MG+CA + VPVD++VPGCPP
Sbjct: 78 RKFAPVVRRLYDQMPEPRWVIAMGTCA-ISGGVYNTYAVVQGSETFVPVDVHVPGCPPRP 136
Query: 662 EALLYGVLQLQKK 700
EAL++G L LQ+K
Sbjct: 137 EALMHGFLLLQEK 149
>UniRef50_Q26783 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor; n=6;
Trypanosomatidae|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor -
Trypanosoma brucei brucei
Length = 202
Score = 174 bits (424), Expect = 2e-42
Identities = 77/144 (53%), Positives = 102/144 (70%)
Frame = +2
Query: 269 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 448
+N + A L DL W S WP+TFGLACCAVEMMH A RYD+DR+G+V R +PRQ
Sbjct: 46 NNALQYAQMTLHDLTEWCLAYSPWPLTFGLACCAVEMMHAYASRYDLDRFGIVPRPTPRQ 105
Query: 449 SDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPV 628
++++IV+GT+TNKMAP LR +Y QM +P+WVISMGSCAN C+R +PV
Sbjct: 106 AEIIIVSGTVTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPV 165
Query: 629 DIYVPGCPPTAEALLYGVLQLQKK 700
D ++PGCPP+AE+L++ + LQKK
Sbjct: 166 DFWIPGCPPSAESLVFCLHTLQKK 189
>UniRef50_Q1IL91 Cluster: NADH-quinone oxidoreductase, B subunit;
n=2; Acidobacteria|Rep: NADH-quinone oxidoreductase, B
subunit - Acidobacteria bacterium (strain Ellin345)
Length = 202
Score = 168 bits (408), Expect = 1e-40
Identities = 75/138 (54%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Frame = +2
Query: 290 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIV 466
++ +D + NW RK S+WPMTFGLACCA+EM+ + RYD+ R+G VFR SPRQSD+MIV
Sbjct: 14 LSSVDYVFNWARKSSVWPMTFGLACCAIEMITASTARYDIARFGSEVFRPSPRQSDLMIV 73
Query: 467 AGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPG 646
AGT+T KMAP ++++Y+QMP+P+WV++MG+CA+ D+IVPVD+YV G
Sbjct: 74 AGTVTLKMAPVVQRIYEQMPEPKWVMAMGACAS-VGGPFNTYATLQGVDKIVPVDVYVVG 132
Query: 647 CPPTAEALLYGVLQLQKK 700
CPP E L YG+L+LQ K
Sbjct: 133 CPPRPENLFYGLLKLQDK 150
>UniRef50_Q3ZXS0 Cluster: Proton-translocating NADH-quinone
oxidoreductase, B subunit; n=3; Dehalococcoides|Rep:
Proton-translocating NADH-quinone oxidoreductase, B
subunit - Dehalococcoides sp. (strain CBDB1)
Length = 200
Score = 167 bits (405), Expect = 3e-40
Identities = 71/138 (51%), Positives = 101/138 (73%), Gaps = 1/138 (0%)
Frame = +2
Query: 290 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIV 466
+ ++ +LNW R SLWP+ FGLACCA+EMM +AA R+D+ R+G+ +FRASPRQ+D+MIV
Sbjct: 54 ITSVEKVLNWSRHYSLWPVMFGLACCAIEMMCMAASRWDLARFGMDIFRASPRQADLMIV 113
Query: 467 AGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPG 646
AGTLT KMAP L+++YDQMP+P+WV++MG+C + +VPVD+YVPG
Sbjct: 114 AGTLTWKMAPWLKRIYDQMPEPKWVLAMGACGTSGGLFRDSYSVVPGFNLVVPVDVYVPG 173
Query: 647 CPPTAEALLYGVLQLQKK 700
CPP EAL+ ++ + +K
Sbjct: 174 CPPRPEALMRAIMDIHEK 191
>UniRef50_Q1IPE7 Cluster: NADH-quinone oxidoreductase, B subunit;
n=7; Bacteria|Rep: NADH-quinone oxidoreductase, B
subunit - Acidobacteria bacterium (strain Ellin345)
Length = 213
Score = 165 bits (401), Expect = 9e-40
Identities = 74/140 (52%), Positives = 99/140 (70%), Gaps = 1/140 (0%)
Frame = +2
Query: 284 MAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVM 460
+ + LD+ +NW RK S+WPMTFGLACCA+EMM + A R+D+ R+G VFR SPRQSD+M
Sbjct: 56 IVLTTLDNAVNWIRKNSIWPMTFGLACCAIEMMSMGASRFDIARFGAEVFRPSPRQSDLM 115
Query: 461 IVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYV 640
I+AG ++ KMAP +R +Y QMP+P+WVISMG+CA ++ +PVDIYV
Sbjct: 116 IIAGRVSQKMAPVIRHLYLQMPEPKWVISMGACAT-SGGVFNNYALVQGVNQYIPVDIYV 174
Query: 641 PGCPPTAEALLYGVLQLQKK 700
PGCPP E L+Y + LQ+K
Sbjct: 175 PGCPPRPEQLIYAITLLQEK 194
>UniRef50_A5UXK1 Cluster: NADH-quinone oxidoreductase, B subunit;
n=5; Chloroflexi (class)|Rep: NADH-quinone
oxidoreductase, B subunit - Roseiflexus sp. RS-1
Length = 268
Score = 165 bits (401), Expect = 9e-40
Identities = 70/130 (53%), Positives = 97/130 (74%), Gaps = 1/130 (0%)
Frame = +2
Query: 314 NWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGTLTNKM 490
NWGR+ S+WP++FGLACCA+EMM R+D+ R+G +FRASPRQ+D+MIVAGT+T KM
Sbjct: 26 NWGRRSSIWPLSFGLACCAIEMMATGLARFDLARFGAEMFRASPRQADLMIVAGTVTKKM 85
Query: 491 APALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEAL 670
AP + ++Y+QMP+PR+VISMG+CA D ++PVD+Y+PGCPP EAL
Sbjct: 86 APQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEAL 145
Query: 671 LYGVLQLQKK 700
L+ ++ LQK+
Sbjct: 146 LHALMTLQKQ 155
>UniRef50_Q8KEC2 Cluster: NADH dehydrogenase I, 20 kDa subunit;
n=26; Bacteria|Rep: NADH dehydrogenase I, 20 kDa subunit
- Chlorobium tepidum
Length = 189
Score = 165 bits (400), Expect = 1e-39
Identities = 73/137 (53%), Positives = 100/137 (72%), Gaps = 1/137 (0%)
Frame = +2
Query: 290 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 469
V +D+++NW R SLWPM FGLACCA+EMM A YD++R+G+ R+SPRQSD+MIVA
Sbjct: 15 VTSVDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVA 74
Query: 470 GTLTNKMAPALRKVYDQMPDPRWVISMGSCAN-XXXXXXXXXXXXXXCDRIVPVDIYVPG 646
GT+T KMA + +Y+QMP+PR+V+SMGSC+N DRI+PVD+YVPG
Sbjct: 75 GTVTMKMAERVVTLYEQMPEPRYVLSMGSCSNSGGPYWHHGYHVLKGVDRIIPVDVYVPG 134
Query: 647 CPPTAEALLYGVLQLQK 697
CPP EAL+ G++++Q+
Sbjct: 135 CPPRPEALIGGLMKIQE 151
>UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits;
n=32; Proteobacteria|Rep: NADH dehydrogenase I, B/C/D
subunits - Geobacter sulfurreducens
Length = 792
Score = 163 bits (395), Expect = 5e-39
Identities = 72/138 (52%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Frame = +2
Query: 290 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIV 466
+A LDDL+NWGR SLWPM FGL+CC VEMM RYD+ R+G V R +PR++D+M++
Sbjct: 13 LASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRGTPREADLMVI 72
Query: 467 AGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPG 646
AGT+ KMAP++ ++Y+QM +P+WVISMGSCAN ++I+PVD++VPG
Sbjct: 73 AGTVFKKMAPSILRLYEQMAEPKWVISMGSCAN-SGGMYDVYSVVQGVNQIIPVDVHVPG 131
Query: 647 CPPTAEALLYGVLQLQKK 700
CPP EA L G++ LQ+K
Sbjct: 132 CPPRPEAFLQGLMLLQEK 149
>UniRef50_Q9F2W1 Cluster: NADH dehydrogenase subunit NuoB2; n=5;
Actinomycetales|Rep: NADH dehydrogenase subunit NuoB2 -
Streptomyces coelicolor
Length = 232
Score = 162 bits (393), Expect = 9e-39
Identities = 75/162 (46%), Positives = 107/162 (66%), Gaps = 1/162 (0%)
Frame = +2
Query: 218 PAPNPTEKRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAP 397
P P P KR +A +A + +LNWGR+ SLW FGLACCA+E + +
Sbjct: 11 PVPLPEPKR-------LGTLARLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFIAASMA 63
Query: 398 RYDMDRYGVV-FRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXX 574
R+D R GV+ F PRQ+D+M+V+GT+T+KMAPA++++Y+QMP+P++VIS G+C+N
Sbjct: 64 RHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNCGG 123
Query: 575 XXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
D+I+PVD+YVPGCPP EALL G+L+LQ+K
Sbjct: 124 PYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEK 165
>UniRef50_Q608X8 Cluster: NADH dehydrogenase I, B subunit; n=7;
Bacteria|Rep: NADH dehydrogenase I, B subunit -
Methylococcus capsulatus
Length = 213
Score = 161 bits (392), Expect = 1e-38
Identities = 78/169 (46%), Positives = 108/169 (63%), Gaps = 1/169 (0%)
Frame = +2
Query: 194 SQIRDTHLPAPNPTEKRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAV 373
S R PAP P + +++A + ARLDDL+ WGRK S+WP FGL+CC V
Sbjct: 4 SLTRADQTPAPKPGGQT----YEEALRR-NILFARLDDLVRWGRKNSIWPFNFGLSCCYV 58
Query: 374 EMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISM 550
EM R+D+ R+G V RASPRQ+D+M+++GT+ KMAP ++ +YDQ+ +P+W+ISM
Sbjct: 59 EMATAFTSRFDIARFGSEVIRASPRQADLMVISGTVFRKMAPVVKHLYDQLLEPKWIISM 118
Query: 551 GSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQK 697
GSCAN D+ +PVD+YVPGCPP EALL G++ LQ+
Sbjct: 119 GSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEALLEGLMMLQE 166
>UniRef50_Q1K3R2 Cluster: NADH-quinone oxidoreductase, B subunit;
n=1; Desulfuromonas acetoxidans DSM 684|Rep:
NADH-quinone oxidoreductase, B subunit - Desulfuromonas
acetoxidans DSM 684
Length = 196
Score = 161 bits (392), Expect = 1e-38
Identities = 79/149 (53%), Positives = 102/149 (68%), Gaps = 3/149 (2%)
Frame = +2
Query: 263 DASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRAS 439
D M ++ +A D +LN R SLWPMTFGLACCA+EMM R+D+ RYG VFR S
Sbjct: 33 DPGAMVQLELA--DKILNLCRANSLWPMTFGLACCAIEMMCSGMARFDISRYGAEVFRPS 90
Query: 440 PRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA--NXXXXXXXXXXXXXXCD 613
PRQSD+MIVAGT+ KMAPA+ +Y+QMP PR+VI++G+CA D
Sbjct: 91 PRQSDLMIVAGTVNKKMAPAVVTLYEQMPAPRYVIALGNCAISGGPFAVEANYDVVLGVD 150
Query: 614 RIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
+++PVD+YVPGCPP EAL+ G+LQLQ+K
Sbjct: 151 QLIPVDVYVPGCPPRPEALIEGILQLQEK 179
>UniRef50_Q6MIR4 Cluster: NADH dehydrogenase I chain B; n=2;
Deltaproteobacteria|Rep: NADH dehydrogenase I chain B -
Bdellovibrio bacteriovorus
Length = 187
Score = 157 bits (380), Expect = 3e-37
Identities = 64/136 (47%), Positives = 98/136 (72%), Gaps = 1/136 (0%)
Frame = +2
Query: 293 ARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVA 469
++LD ++ WGRK SLWPM +G ACC +E M + P+YD+ R+G V R SPRQ+D+++VA
Sbjct: 32 SKLDAIVAWGRKNSLWPMPYGTACCGIEFMSVMGPKYDLARFGAEVARFSPRQADLLVVA 91
Query: 470 GTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 649
GT+T KMAP + ++Y QM +P++V+SMG+CA+ D+++PVD+Y+PGC
Sbjct: 92 GTITEKMAPVIVRIYQQMLEPKYVLSMGACAS-SGGFYRAYHVLQGVDKVIPVDVYIPGC 150
Query: 650 PPTAEALLYGVLQLQK 697
PPT EA++ G++ LQ+
Sbjct: 151 PPTPEAVMDGIMALQR 166
>UniRef50_P65576 Cluster: NADH-quinone oxidoreductase subunit B;
n=45; Bacteria|Rep: NADH-quinone oxidoreductase subunit
B - Mycobacterium bovis
Length = 184
Score = 155 bits (375), Expect = 1e-36
Identities = 69/138 (50%), Positives = 98/138 (71%), Gaps = 1/138 (0%)
Frame = +2
Query: 290 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVV-FRASPRQSDVMIV 466
++ ++ + + RK SLWP TFGLACCA+EMM A PR+D+ R+G+ F A+PRQ+D+MIV
Sbjct: 13 LSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADLMIV 72
Query: 467 AGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPG 646
AG ++ KMAP LR++YDQM +P+WV++MG CA+ D +VPVDIY+PG
Sbjct: 73 AGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCAS-SGGMFNNYAIVQGVDHVVPVDIYLPG 131
Query: 647 CPPTAEALLYGVLQLQKK 700
CPP E LL+ +L+L +K
Sbjct: 132 CPPRPEMLLHAILKLHEK 149
>UniRef50_A5GIB4 Cluster: NAD(P)H-quinone oxidoreductase subunit K;
n=10; cellular organisms|Rep: NAD(P)H-quinone
oxidoreductase subunit K - Synechococcus sp. (strain
WH7803)
Length = 248
Score = 154 bits (374), Expect = 2e-36
Identities = 71/175 (40%), Positives = 108/175 (61%), Gaps = 2/175 (1%)
Frame = +2
Query: 182 TPVVSQIRDTHLPAPNPTEKRPYSPFQDASNMAEMAV-ARLDDLLNWGRKGSLWPMTFGL 358
+P + +RD + P +++E + LDDL NW R SLWP+ +G
Sbjct: 5 SPSIQALRDLREASCGPVAGAADGAPTVTQDLSENVILTSLDDLHNWARLSSLWPLLYGT 64
Query: 359 ACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRW 538
ACC +E + R+D DR+G+V R+SPRQ+D++IVAGT+T KMAPAL ++Y+QMP+P++
Sbjct: 65 ACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKY 124
Query: 539 VISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
VI+MG+C D+++PVD+Y+PGCPP EA+ V++L+KK
Sbjct: 125 VIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKK 179
>UniRef50_Q9P9G2 Cluster: F420H2 dehydrogenase subunit FpoB; n=6;
Archaea|Rep: F420H2 dehydrogenase subunit FpoB -
Methanosarcina mazei (Methanosarcina frisia)
Length = 184
Score = 153 bits (372), Expect = 3e-36
Identities = 64/135 (47%), Positives = 89/135 (65%)
Frame = +2
Query: 296 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGT 475
+ D++NWGRK SLW MT + CC VEM+ YD DR+G++ R SPR +DVMI++G
Sbjct: 39 KAQDIINWGRKNSLWFMTQPMGCCGVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISGY 98
Query: 476 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 655
+T K PAL++++DQMP P+WVI+MG CA D I P+D+Y+PGCPP
Sbjct: 99 VTKKYLPALKRLWDQMPAPKWVIAMGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCPP 158
Query: 656 TAEALLYGVLQLQKK 700
EAL+ G ++LQ+K
Sbjct: 159 RPEALIQGFVELQEK 173
>UniRef50_Q9HRM0 Cluster: NADH dehydrogenase/oxidoreductase; n=6;
Halobacteriaceae|Rep: NADH dehydrogenase/oxidoreductase
- Halobacterium salinarium (Halobacterium halobium)
Length = 235
Score = 153 bits (370), Expect = 5e-36
Identities = 64/151 (42%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Frame = +2
Query: 251 SPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-V 427
S ++A + + D +NW R S++ + FG+ACC++EMMH + ++D+DR+ V
Sbjct: 35 SRLREAFGSTPFILTKFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYSVKHDLDRFHAGV 94
Query: 428 FRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXX 607
RASPRQ+DVMIV GT+ +K AP +++VYDQMP+P++V++MG+C+
Sbjct: 95 PRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPEPKFVVNMGNCSTSGGPFQEGYNVVKG 154
Query: 608 CDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
+ ++PVDI++PGCPP EAL+YGV +LQ++
Sbjct: 155 AEEVIPVDIHIPGCPPRPEALVYGVAKLQER 185
>UniRef50_Q44240 Cluster: NAD(P)H-quinone oxidoreductase subunit K
(EC 1.6.5.-) (NAD(P)H dehydrogenase I, subunit K); n=65;
cellular organisms|Rep: NAD(P)H-quinone oxidoreductase
subunit K (EC 1.6.5.-) (NAD(P)H dehydrogenase I, subunit
K) - Anabaena sp. (strain PCC 7120)
Length = 245
Score = 153 bits (370), Expect = 5e-36
Identities = 68/159 (42%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Frame = +2
Query: 227 NPTEKRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYD 406
NP E+ + QD S + + +DDL NW R SLWP+ FG ACC +E + R+D
Sbjct: 17 NPIERPTIT--QDLSE--NVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFD 72
Query: 407 MDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXX 583
DR+G++ R+SPRQ+D++I AGT+T KMAP L ++Y+QMP+P++VI+MG+C
Sbjct: 73 FDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSV 132
Query: 584 XXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
D+++PVD+Y+PGCPP EA++ +++L+KK
Sbjct: 133 DSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKK 171
>UniRef50_P19050 Cluster: NAD(P)H-quinone oxidoreductase subunit K
(EC 1.6.5.-) (NAD(P)H dehydrogenase I, subunit K); n=16;
cellular organisms|Rep: NAD(P)H-quinone oxidoreductase
subunit K (EC 1.6.5.-) (NAD(P)H dehydrogenase I, subunit
K) - Synechocystis sp. (strain PCC 6803)
Length = 248
Score = 152 bits (368), Expect = 9e-36
Identities = 65/154 (42%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
Frame = +2
Query: 245 PYSPFQDASNMAEMAV-ARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYG 421
P S Q +++E + +DDL NW + SLWP+ +G ACC +E + R+D DR+G
Sbjct: 22 PASRSQVTQDLSENVILTTVDDLYNWAKLSSLWPLLYGTACCFIEFAALIGSRFDFDRFG 81
Query: 422 VVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXX 598
+V R+SPRQ+D++I AGT+T KMAPAL ++Y++MP+P++VI+MG+C
Sbjct: 82 LVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTA 141
Query: 599 XXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
D+++PVD+Y+PGCPP EA+ +++L+KK
Sbjct: 142 VRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKK 175
>UniRef50_A3PKI1 Cluster: NADH-quinone oxidoreductase, B subunit;
n=5; Proteobacteria|Rep: NADH-quinone oxidoreductase, B
subunit - Rhodobacter sphaeroides (strain ATCC 17029 /
ATH 2.4.9)
Length = 205
Score = 149 bits (360), Expect = 9e-35
Identities = 73/154 (47%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Frame = +2
Query: 242 RPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYG 421
RP + + A RLDDL+ W RK SLWP FGL+CC VEM P YD R+G
Sbjct: 7 RPDAEAPEDRMAASHLFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTPVYDQARFG 66
Query: 422 V-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXX 598
V R++PRQ+D++IV+GT+ KMA L ++Y QM +PRWVISMG+CAN
Sbjct: 67 AEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACAN-SGGMYDIYSV 125
Query: 599 XXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
D +PVD+YVPGCPP EAL+ ++ LQ K
Sbjct: 126 VQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSK 159
>UniRef50_Q9I0K0 Cluster: NADH-quinone oxidoreductase subunit B;
n=78; Bacteria|Rep: NADH-quinone oxidoreductase subunit
B - Pseudomonas aeruginosa
Length = 225
Score = 148 bits (359), Expect = 1e-34
Identities = 67/134 (50%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Frame = +2
Query: 299 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGT 475
L+ +NWGRK SLWP FGL+CC VEM +D+ R+G V RASPRQ+D M++AGT
Sbjct: 47 LNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGT 106
Query: 476 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 655
KMAP ++++Y+QM +P+WVISMGSCAN D+ +PVD+Y+PGCPP
Sbjct: 107 CFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPP 165
Query: 656 TAEALLYGVLQLQK 697
EA L G++ LQ+
Sbjct: 166 RPEAFLQGLMLLQE 179
>UniRef50_Q67KN6 Cluster: NADH dehydrogenase I subunit B; n=5;
Bacteria|Rep: NADH dehydrogenase I subunit B -
Symbiobacterium thermophilum
Length = 182
Score = 147 bits (357), Expect = 2e-34
Identities = 64/131 (48%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Frame = +2
Query: 308 LLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGTLTN 484
+L WG S WP+ FG+ACCA+EMM + +YD+ R+G R SPRQ+DVMIVAGT+
Sbjct: 39 VLGWGYGNSTWPLGFGIACCAIEMMAACSSKYDIARFGSEAMRMSPRQADVMIVAGTVNE 98
Query: 485 KMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAE 664
KMA +R++YDQM +P++VI+MG+CA+ ++VPVD+YVPGCPP E
Sbjct: 99 KMAVVVRRLYDQMSEPKFVIAMGACASNGGPYWDTYNVVDGVHKVVPVDVYVPGCPPRPE 158
Query: 665 ALLYGVLQLQK 697
ALL G++++Q+
Sbjct: 159 ALLQGLMEIQE 169
>UniRef50_Q2S5J2 Cluster: NADH-quinone oxidoreductase chain b; n=3;
Bacteria|Rep: NADH-quinone oxidoreductase chain b -
Salinibacter ruber (strain DSM 13855)
Length = 213
Score = 143 bits (347), Expect = 3e-33
Identities = 65/136 (47%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Frame = +2
Query: 296 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAG 472
R+D LNW R SL PM GLACCA+EMM A P+YD R+G R SPRQ+D+MIVAG
Sbjct: 16 RVDTFLNWARSNSLMPMPMGLACCAIEMMGFAGPKYDSARFGSEAMRFSPRQADLMIVAG 75
Query: 473 TLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCP 652
+ KM+ A+R+V+DQM DP+W I+MG+CA+ D +PVD+Y+ GCP
Sbjct: 76 WCSYKMSHAIRRVWDQMGDPKWCIAMGACAS-TGGMHRCYGVVQGVDNFLPVDVYISGCP 134
Query: 653 PTAEALLYGVLQLQKK 700
P E++L+ ++ +Q+K
Sbjct: 135 PRPESVLHALMDIQEK 150
>UniRef50_A4J659 Cluster: NADH-quinone oxidoreductase, B subunit;
n=1; Desulfotomaculum reducens MI-1|Rep: NADH-quinone
oxidoreductase, B subunit - Desulfotomaculum reducens
MI-1
Length = 196
Score = 142 bits (345), Expect = 6e-33
Identities = 65/141 (46%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Frame = +2
Query: 284 MAVARLDDLLNWGRKGSLWPMTFGLACCAVE-MMHIAAPRYDMDRYGV-VFRASPRQSDV 457
++V L+ LLN R SLWPM FGLACCA+E +M R+D+ R+G V RASPRQ+DV
Sbjct: 43 VSVGPLEKLLNLARANSLWPMGFGLACCAIEGLMAANMARFDLARFGYEVMRASPRQADV 102
Query: 458 MIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIY 637
M+V GT+T K AP + ++Y+QM +P++VI+MGSCA D+++PVD+Y
Sbjct: 103 MLVCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPFVDSYSVVPGVDKLIPVDVY 162
Query: 638 VPGCPPTAEALLYGVLQLQKK 700
+PGC P +A+++G ++L++K
Sbjct: 163 IPGCAPRPDAVIHGFMKLKEK 183
>UniRef50_Q8F7Q0 Cluster: NADH dehydrogenase I chain B; n=7;
Bacteria|Rep: NADH dehydrogenase I chain B - Leptospira
interrogans
Length = 186
Score = 140 bits (340), Expect = 2e-32
Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Frame = +2
Query: 251 SPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVF 430
+P Q +M ++ ++ ++ WGR SLWP F ACC +E M A YD+ R+G
Sbjct: 9 TPGQALGDMVQLG--NVESVIQWGRSYSLWPYPFATACCGIEYMSTACSDYDIARFGAER 66
Query: 431 RA-SPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXX 607
+ SPRQ+D+++V GT+T KMAP LR++YDQM +P++VIS+G+CA+
Sbjct: 67 PSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACAS-SGGMFHTYGVLQG 125
Query: 608 CDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
DRI+PVD+YVPGCPP EA+L +L+LQ K
Sbjct: 126 VDRILPVDVYVPGCPPRPEAILDALLKLQTK 156
>UniRef50_A2ZXB2 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 149
Score = 140 bits (339), Expect = 3e-32
Identities = 60/80 (75%), Positives = 69/80 (86%)
Frame = +2
Query: 269 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 448
S AE ++++DDL+NW R+GS+WPMTFGLACCAVEMMH A RYD DR+GV+FR SPRQ
Sbjct: 43 SKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQ 102
Query: 449 SDVMIVAGTLTNKMAPALRK 508
SD MIVAGTLTNKMAPALRK
Sbjct: 103 SDCMIVAGTLTNKMAPALRK 122
>UniRef50_A0RY66 Cluster: NADH-ubiquinone oxidoreductase, subunit B;
n=2; Thermoprotei|Rep: NADH-ubiquinone oxidoreductase,
subunit B - Cenarchaeum symbiosum
Length = 160
Score = 140 bits (339), Expect = 3e-32
Identities = 62/131 (47%), Positives = 87/131 (66%), Gaps = 1/131 (0%)
Frame = +2
Query: 311 LNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFR-ASPRQSDVMIVAGTLTNK 487
+NWGR SLWP+ ACC+VE + P+YD++R+G++ S RQ D+++V GT+T K
Sbjct: 20 INWGRIWSLWPVHIETACCSVEFGAASGPKYDVERFGIIEAFGSLRQCDLIVVQGTITRK 79
Query: 488 MAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEA 667
MAP LR VYDQMP+P++VI+MG+CA D ++PVD+YVPGCPP E
Sbjct: 80 MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPVDVYVPGCPPRPET 139
Query: 668 LLYGVLQLQKK 700
L+ G + LQ+K
Sbjct: 140 LIQGCMLLQEK 150
>UniRef50_A7H9V3 Cluster: NADH-quinone oxidoreductase, B subunit;
n=5; Bacteria|Rep: NADH-quinone oxidoreductase, B
subunit - Anaeromyxobacter sp. Fw109-5
Length = 183
Score = 136 bits (328), Expect = 6e-31
Identities = 62/131 (47%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Frame = +2
Query: 311 LNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVF-RASPRQSDVMIVAGTLTNK 487
L W RK SL+ F ACC +E M +A+ RYD+DR+G R SPRQ+D++IV GT+ K
Sbjct: 30 LGWARKYSLFQYPFVTACCGMEFMTVASARYDLDRFGAALPRFSPRQADLLIVVGTVNCK 89
Query: 488 MAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEA 667
AP LR+VY+Q+ +P+WV++ G CA+ DRIVPVD+Y+PGCPP E
Sbjct: 90 QAPILRRVYEQIAEPKWVVAFGVCAS-SGGFYDNYATVQGIDRIVPVDVYIPGCPPRPEQ 148
Query: 668 LLYGVLQLQKK 700
+L G++ LQ+K
Sbjct: 149 VLDGIMLLQQK 159
>UniRef50_Q8ZU66 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=5; Pyrobaculum|Rep: NADH-ubiquinone oxidoreductase
subunit - Pyrobaculum aerophilum
Length = 190
Score = 131 bits (316), Expect = 2e-29
Identities = 59/139 (42%), Positives = 90/139 (64%)
Frame = +2
Query: 284 MAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMI 463
M A+L+ + WG + SLWP+ +CC VE+ H +AP +D +R+GV+ + RQ++V+I
Sbjct: 10 MKKAKLERVFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFNTMRQTNVII 69
Query: 464 VAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVP 643
V GT+T KMA L++VY+QMP+P++V++MG+CA D IVPVD+Y+
Sbjct: 70 VEGTITRKMAKVLKQVYEQMPEPKFVLAMGACA-VRGGLFWNSYHVVQVDTIVPVDVYIA 128
Query: 644 GCPPTAEALLYGVLQLQKK 700
GCPPT EA++ + L K
Sbjct: 129 GCPPTPEAVIRAFIMLHNK 147
>UniRef50_Q4J8C7 Cluster: NADH:ubiquinone oxidoreductase, B subunit;
n=6; Thermoprotei|Rep: NADH:ubiquinone oxidoreductase, B
subunit - Sulfolobus acidocaldarius
Length = 171
Score = 124 bits (298), Expect = 3e-27
Identities = 59/134 (44%), Positives = 80/134 (59%)
Frame = +2
Query: 299 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 478
+ L +WG SLWP +CC E AA R+D +RYGV+ +S RQ++++++ GTL
Sbjct: 28 IKSLKDWGTSFSLWPPHLTTSCCGTEFGAFAAARFDAERYGVLPFSSARQTNLLVIEGTL 87
Query: 479 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPT 658
T KM A + VYDQMP+P++VI+MG+CA D +PVDIY PGCP
Sbjct: 88 TRKMGRAAKIVYDQMPEPKFVIAMGACALEGGIFWNSYNTVLPSDLGIPVDIYAPGCPTR 147
Query: 659 AEALLYGVLQLQKK 700
EAL VL LQK+
Sbjct: 148 PEALARAVLLLQKR 161
>UniRef50_O28446 Cluster: F420H2:quinone oxidoreductase, 39.7 kDa
subunit, putative; n=4; Archaea|Rep: F420H2:quinone
oxidoreductase, 39.7 kDa subunit, putative -
Archaeoglobus fulgidus
Length = 353
Score = 121 bits (291), Expect = 2e-26
Identities = 59/134 (44%), Positives = 78/134 (58%)
Frame = +2
Query: 299 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 478
L + WG K SLWP+ ACC E+ H A YD +R G + RQ++++IV G +
Sbjct: 16 LGPIKKWGTKWSLWPVHLVTACCGAELAHAFACGYDGERIGALNYGIARQTNLIIVEGAI 75
Query: 479 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPT 658
T KMA LR ++QMPDP++VI MG+C D +VPVD ++PGCPPT
Sbjct: 76 TRKMAKVLRITWEQMPDPKFVIVMGACGLQGGIFWNGYHMVKPSD-VVPVDFFIPGCPPT 134
Query: 659 AEALLYGVLQLQKK 700
EALL G+ QLQ K
Sbjct: 135 PEALLRGIRQLQFK 148
>UniRef50_A3H7K7 Cluster: NADH-quinone oxidoreductase, B subunit;
n=4; Thermoproteaceae|Rep: NADH-quinone oxidoreductase,
B subunit - Caldivirga maquilingensis IC-167
Length = 374
Score = 121 bits (291), Expect = 2e-26
Identities = 56/133 (42%), Positives = 80/133 (60%)
Frame = +2
Query: 302 DDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLT 481
D L +WG K S+WP ACC VE H +AP YD +R+G + PRQ++ +++ GT+T
Sbjct: 25 DSLASWGTKFSIWPAHLVTACCGVEFAHASAPGYDAERWGFLPIFGPRQTNSIVIEGTVT 84
Query: 482 NKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTA 661
KMA ++ Y+QMP P++VI+MGSCA + IVPVD +V GCPPT
Sbjct: 85 RKMARIVKTAYEQMPYPKFVIAMGSCA-MEGGVFWNSYHVVRVNEIVPVDAWVMGCPPTP 143
Query: 662 EALLYGVLQLQKK 700
EA++ + +Q K
Sbjct: 144 EAVIRAIRMVQSK 156
>UniRef50_A0L9R6 Cluster: NADH-quinone oxidoreductase, B subunit;
n=1; Magnetococcus sp. MC-1|Rep: NADH-quinone
oxidoreductase, B subunit - Magnetococcus sp. (strain
MC-1)
Length = 213
Score = 119 bits (287), Expect = 6e-26
Identities = 55/133 (41%), Positives = 79/133 (59%)
Frame = +2
Query: 299 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 478
++DL NW R S+W + FG C A+EM + PR+D RYGV +RA+PRQS++ IV+G L
Sbjct: 43 VEDLFNWARSNSIWVLGFGTGCGAIEMRPLMTPRFDAYRYGVQWRATPRQSNLFIVSGYL 102
Query: 479 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPT 658
+ K + + Y+QM P++V+ +GSC D +PVD+YV GC P
Sbjct: 103 SVKTLKRVVRAYEQMQSPKYVMGLGSCTINGGMYWDSYNTIKQLDDYLPVDLYVTGCMPR 162
Query: 659 AEALLYGVLQLQK 697
EALL G+ L+K
Sbjct: 163 PEALLSGIEALKK 175
>UniRef50_Q2H7B9 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 189
Score = 117 bits (281), Expect = 3e-25
Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +2
Query: 182 TPVVSQIRDTHLPAP-NPTEKRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGL 358
T S R +P P PT S + +++ E A++ LD L+NW R+GSLWPM+FGL
Sbjct: 48 TEQTSPARQPRIPPPVRPT--LAVSTEKRPNSVTEYALSTLDGLINWARQGSLWPMSFGL 105
Query: 359 ACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAG 472
ACCA+EMMH++ PRYD DR G++FRASPRQSDVMIVAG
Sbjct: 106 ACCAIEMMHLSMPRYDNDRQGIIFRASPRQSDVMIVAG 143
Score = 63.3 bits (147), Expect = 6e-09
Identities = 27/30 (90%), Positives = 28/30 (93%)
Frame = +2
Query: 611 DRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
DRIVPVDIYVPGCPPTAEAL YG+ QLQKK
Sbjct: 146 DRIVPVDIYVPGCPPTAEALQYGIFQLQKK 175
>UniRef50_Q9YC23 Cluster: NuoB homolog; n=1; Aeropyrum pernix|Rep:
NuoB homolog - Aeropyrum pernix
Length = 199
Score = 113 bits (272), Expect = 4e-24
Identities = 49/134 (36%), Positives = 82/134 (61%)
Frame = +2
Query: 299 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 478
LD +++W SLWP+ +CC+ E APR D +++G + PRQ++++I+ GT+
Sbjct: 31 LDKMVDWATSFSLWPVHLTTSCCSTEFAATFAPRIDGEQFGALPWVGPRQTNLIIIEGTV 90
Query: 479 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPT 658
T KMA A+R ++QMP P++ I+MG+CA +++P+DIY+PGCPP
Sbjct: 91 TKKMACAVRLTWEQMPHPKFAIAMGACALDGGLFYNSYNIVKPW-QVLPIDIYIPGCPPR 149
Query: 659 AEALLYGVLQLQKK 700
E + +++LQ+K
Sbjct: 150 PEGVARAIVELQRK 163
>UniRef50_A3DKH2 Cluster: NADH-quinone oxidoreductase, B subunit;
n=1; Staphylothermus marinus F1|Rep: NADH-quinone
oxidoreductase, B subunit - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 165
Score = 109 bits (263), Expect = 5e-23
Identities = 48/124 (38%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
Frame = +2
Query: 338 WPMTFGL-AC--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 508
W + F AC C +E++ P YD +R+G+ S R +D+++V G +T K A L++
Sbjct: 32 WLIHFNTGACNGCDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTGAVTKKAAERLKR 91
Query: 509 VYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQ 688
+Y+QMPDP++V+++G+CA D+++PVDIYVPGCPP EA+L G+++
Sbjct: 92 LYEQMPDPKFVVAVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCPPRPEAILDGIVK 151
Query: 689 LQKK 700
L K+
Sbjct: 152 LLKR 155
>UniRef50_Q9V0R6 Cluster: NADH ubiquinone oxidoreductase subunit;
n=8; Archaea|Rep: NADH ubiquinone oxidoreductase subunit
- Pyrococcus abyssi
Length = 170
Score = 106 bits (254), Expect = 6e-22
Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C +E++ PRYD +R+GV SPR +D+++V G +TN+ ++ VY+Q P+P+ VI
Sbjct: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG-VLQLQK 697
++GSC DR++PVD++VPGCPP EA+L+G VL L+K
Sbjct: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEK 154
>UniRef50_Q9V0S7 Cluster: NuoB NADH dehydrogenase I, subunit B; n=4;
Thermococcaceae|Rep: NuoB NADH dehydrogenase I, subunit
B - Pyrococcus abyssi
Length = 195
Score = 105 bits (252), Expect = 1e-21
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Frame = +2
Query: 275 MAEMAVARL-DDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQS 451
M EM RL + L NW RK SLW ++F C +EM + RYD++R+G++ SPRQ
Sbjct: 1 MREMVDWRLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQY 60
Query: 452 DVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVD 631
D+ ++ G +T K + Y+ PDP++V++ GSC D+ +PVD
Sbjct: 61 DLFLITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVD 120
Query: 632 IYVPGCPPTAEALLYGVLQLQK 697
+++ GC P EA+L G+ +L +
Sbjct: 121 VFIAGCMPRPEAVLDGIYKLME 142
>UniRef50_A6Q8J4 Cluster: NADH-quinone oxidoreductase, chain B; n=2;
Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
chain B - Sulfurovum sp. (strain NBC37-1)
Length = 140
Score = 104 bits (249), Expect = 2e-21
Identities = 42/117 (35%), Positives = 73/117 (62%)
Frame = +2
Query: 350 FGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPD 529
F CC++EM PRYD +RYG + +PRQ+DV+++ G ++ K+ PAL + Y QMP+
Sbjct: 4 FCTGCCSLEMAAAMGPRYDWERYGYMPTPTPRQADVLMITGLVSKKILPALLRTYAQMPE 63
Query: 530 PRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
P++V+++G+C+ I+P D+++ GCPP EA++ G+ Q+++K
Sbjct: 64 PKYVVALGACSFDGGPYNDSLSVIKNPTEILPADVFIAGCPPKPEAIIEGLEQVKQK 120
>UniRef50_A6DBV2 Cluster: NADH:ubiquinone oxidoreductase 20 kD
subunit and related Fe-S oxidoreductase; n=1;
Caminibacter mediatlanticus TB-2|Rep: NADH:ubiquinone
oxidoreductase 20 kD subunit and related Fe-S
oxidoreductase - Caminibacter mediatlanticus TB-2
Length = 164
Score = 102 bits (244), Expect = 1e-20
Identities = 45/125 (36%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Frame = +2
Query: 323 RKGSLWPM---TFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMA 493
RK S W + T G C +E++ AP+YD++R+G + R +P+QSD+++V G +T
Sbjct: 8 RKKSPWILHYNTGGCNGCDIEILATLAPKYDIERFGALNRGNPKQSDILLVTGPVTMHCK 67
Query: 494 PALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALL 673
LR++Y +MP+P+ V++MG+C + D I+PVD+++PGC P EAL+
Sbjct: 68 DVLRRLYLEMPEPKVVVAMGACGHGGGVFRHLYNVNDGVDSIIPVDVWIPGCCPRPEALI 127
Query: 674 YGVLQ 688
G+++
Sbjct: 128 DGIVE 132
>UniRef50_UPI00015BB165 Cluster: NADH-quinone oxidoreductase, B
subunit; n=1; Ignicoccus hospitalis KIN4/I|Rep:
NADH-quinone oxidoreductase, B subunit - Ignicoccus
hospitalis KIN4/I
Length = 207
Score = 99 bits (238), Expect = 5e-20
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
Frame = +2
Query: 293 ARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAG 472
A + + L W R+ SLW + G+ CCA+EMM A +D +R GV+ RA+PRQ DV+++ G
Sbjct: 18 APVKEALKWSRRNSLWLLHLGIMCCAIEMMQAAFAFHDFERLGVLARATPRQVDVILING 77
Query: 473 TLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVP-------VD 631
+ K+A LR+++ Q P PR+VI MG CA ++ D
Sbjct: 78 PVNRKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDGIHEVIESLPEEYRKD 137
Query: 632 IYV---PGCPPTAEALLYGVLQLQK 697
++V GCPP E LL +L++++
Sbjct: 138 VHVVNLAGCPPRPEGLLRAILKMEE 162
>UniRef50_A1ALK4 Cluster: NADH-quinone oxidoreductase, B subunit;
n=2; Pelobacter propionicus DSM 2379|Rep: NADH-quinone
oxidoreductase, B subunit - Pelobacter propionicus
(strain DSM 2379)
Length = 164
Score = 99.1 bits (236), Expect = 9e-20
Identities = 43/134 (32%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Frame = +2
Query: 299 LDDLLNWGRKGSLWPMTFGL-AC--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 469
+D ++NW R S W + + AC C +E++ P +D++R+G + +PR +DV++ +
Sbjct: 4 IDRIVNWARIKSPWVIHYNTGACNGCDIEIVATLTPVFDIERFGCQLKGTPRHADVLLCS 63
Query: 470 GTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 649
G +T + + ++Y+QMP+P++V+++GSCA D ++PV YVPGC
Sbjct: 64 GPVTRQSRDRIIRIYEQMPEPKFVVAVGSCACSGGVFQGCYNILGGIDSVIPVSAYVPGC 123
Query: 650 PPTAEALLYGVLQL 691
EA++ GV++L
Sbjct: 124 AARPEAIIDGVVKL 137
>UniRef50_Q89GK1 Cluster: HycG protein; n=14; Proteobacteria|Rep:
HycG protein - Bradyrhizobium japonicum
Length = 177
Score = 97.9 bits (233), Expect = 2e-19
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Frame = +2
Query: 233 TEKRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLAC--CAVEMMHIAAPRYD 406
TE+ P SP A AV R GR S+ + G +C C +E+ + YD
Sbjct: 15 TEQAP-SPDDAAVTELATAVGRAARR-RLGRSLSIREVDAG-SCNGCELEIHALNNAYYD 71
Query: 407 MDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXX 586
++R+G+ F ASPR +DV++V G +T M AL + Y PDP+WV+++G CA
Sbjct: 72 VERFGLRFVASPRHADVLMVTGPVTKNMRDALERTYHATPDPKWVVAVGDCARDGGCFAG 131
Query: 587 XXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQL 691
++VPVD+++PGCPP +L G+L L
Sbjct: 132 SYAVVGGVSQVVPVDLHIPGCPPPPTTILRGLLAL 166
>UniRef50_Q609U0 Cluster: Hydrogenase subunit; n=2;
Proteobacteria|Rep: Hydrogenase subunit - Methylococcus
capsulatus
Length = 169
Score = 97.1 bits (231), Expect = 4e-19
Identities = 42/109 (38%), Positives = 65/109 (59%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C +E+ + P YD++RYGV F ASPR +DV++V G ++ M AL+ ++ P+P+WV+
Sbjct: 58 CELEIAALGNPFYDIERYGVHFVASPRHADVLMVTGPVSRHMQAALQATWEATPEPKWVV 117
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQL 691
++GSCA ++PVD +PGCPPT L+ G+L L
Sbjct: 118 AVGSCAADGGEFGVNYASCGAVGNVLPVDAVIPGCPPTPTDLVRGLLSL 166
>UniRef50_A0UXP2 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=2; Bacteria|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Clostridium
cellulolyticum H10
Length = 266
Score = 97.1 bits (231), Expect = 4e-19
Identities = 41/108 (37%), Positives = 65/108 (60%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C E+ + P D++R+G+ F ASPR +D+++V G ++ M AL K Y+ P P+ V+
Sbjct: 154 CDYEVQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVV 213
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQ 688
+ G+CA D I+PVD+Y+PGCPP +AL+YG+L+
Sbjct: 214 AAGACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILK 261
>UniRef50_Q0W3I3 Cluster: Ech hydrogenase, subunit C; n=6; cellular
organisms|Rep: Ech hydrogenase, subunit C - Uncultured
methanogenic archaeon RC-I
Length = 157
Score = 96.3 bits (229), Expect = 6e-19
Identities = 45/124 (36%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Frame = +2
Query: 323 RKGSLWPM---TFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMA 493
RK S W + T G C +E++ PRYD+ R+GV +P+ +DVM+V G +T K
Sbjct: 8 RKKSPWVIHVNTGGCNGCDLEILSCLTPRYDISRFGVYSTGNPKHADVMLVVGPVTLKYK 67
Query: 494 PALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALL 673
+ +Y+QMPDP+ V+++GSCA+ D+++PVD+YVPGC E ++
Sbjct: 68 EIITNLYNQMPDPKVVMAVGSCASTGAIYQGCYGTCGSLDKVIPVDVYVPGCNCRPEGII 127
Query: 674 YGVL 685
G++
Sbjct: 128 DGLV 131
>UniRef50_A3DM92 Cluster: NADH-quinone oxidoreductase, B subunit;
n=1; Staphylothermus marinus F1|Rep: NADH-quinone
oxidoreductase, B subunit - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 179
Score = 96.3 bits (229), Expect = 6e-19
Identities = 46/128 (35%), Positives = 71/128 (55%)
Frame = +2
Query: 317 WGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAP 496
W R S+W + + AC A+E+ D +R+G++ SPRQ+DV+++ G +T K
Sbjct: 14 WVRSRSIWMIHYCSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVIMGYVTKKTLK 73
Query: 497 ALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLY 676
L ++Y QMP+PR+V+ +C D +PVD++VPGC P AE L
Sbjct: 74 VLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPGCMPRAEDWLQ 133
Query: 677 GVLQLQKK 700
G L+L+KK
Sbjct: 134 GFLKLRKK 141
>UniRef50_Q9X0U1 Cluster: NADH dehydrogenase, putative; n=4;
Thermotogaceae|Rep: NADH dehydrogenase, putative -
Thermotoga maritima
Length = 178
Score = 95.9 bits (228), Expect = 8e-19
Identities = 43/126 (34%), Positives = 67/126 (53%)
Frame = +2
Query: 323 RKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPAL 502
R S+W + + C AVE+ R+DM+R+G+ A+PRQ+D++++ G L K +
Sbjct: 15 RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRV 74
Query: 503 RKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGV 682
Y+QMPDP++V+ GSC D +PVD+Y+ GC P EA+L
Sbjct: 75 IYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAF 134
Query: 683 LQLQKK 700
L +K
Sbjct: 135 NYLMEK 140
>UniRef50_Q0W2C0 Cluster: Hydrogenase, small subunit-like protein;
n=2; cellular organisms|Rep: Hydrogenase, small
subunit-like protein - Uncultured methanogenic archaeon
RC-I
Length = 247
Score = 94.7 bits (225), Expect = 2e-18
Identities = 40/107 (37%), Positives = 64/107 (59%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C VE+ ++ YD++R+G+ ASPR +D ++V G +T M L + Y+ PDP+ VI
Sbjct: 130 CEVEVNSLSNAIYDIERFGLHIVASPRHADALLVTGPVTRNMERGLMQSYNATPDPKMVI 189
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVL 685
+MG+CA D +VPVD+Y+PGCPP +A++ G++
Sbjct: 190 AMGACAITGGIFRDSYAVYNGVDALVPVDVYIPGCPPRPQAIIQGIM 236
>UniRef50_Q8PY02 Cluster: Formate hydrogenlyase subunit 7; n=3;
Methanomicrobia|Rep: Formate hydrogenlyase subunit 7 -
Methanosarcina mazei (Methanosarcina frisia)
Length = 170
Score = 94.3 bits (224), Expect = 3e-18
Identities = 42/110 (38%), Positives = 68/110 (61%)
Frame = +2
Query: 371 VEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISM 550
+E+ ++ P YD++R+G+ F ASPR +DV++V G +T MA A +K Y+ MP P++VI++
Sbjct: 58 MEISNLGNPHYDVERFGISFVASPRHADVLLVTGAVTLNMAEAAKKTYEAMPYPKYVIAV 117
Query: 551 GSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
G A D+I+PVD+ +PG PP+ + +L G+ L KK
Sbjct: 118 GDDACDGGIYKGSYAVLGGVDKILPVDVKIPGNPPSPKEILQGIFALVKK 167
>UniRef50_Q7M874 Cluster: HYDROGENASE-Ni,Fe-hydrogenase III small
subunit; n=3; cellular organisms|Rep:
HYDROGENASE-Ni,Fe-hydrogenase III small subunit -
Wolinella succinogenes
Length = 276
Score = 93.1 bits (221), Expect = 6e-18
Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Frame = +2
Query: 296 RLDDLLNWGRKGSLWPMTFGLAC--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 469
+L+ L + GR S++ + G +C C +E+ P +D +R+G A+PR +D+++
Sbjct: 19 KLELLKHIGRSFSVYRIDCG-SCNGCEIEIFAAITPLWDPERFGFKLVANPRHADILLCT 77
Query: 470 GTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 649
G +T +M L + Y+ PDP+ V+++G+C + D+I+PVD+Y+PGC
Sbjct: 78 GPVTRQMYYPLLRAYEAAPDPKLVVALGACGSTGGIFYDAYSVLSGIDKIIPVDVYIPGC 137
Query: 650 PPTAEALLYGV 682
PP +++YG+
Sbjct: 138 PPHPASIIYGL 148
>UniRef50_A1ASR2 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=3; cellular organisms|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Pelobacter propionicus
(strain DSM 2379)
Length = 179
Score = 93.1 bits (221), Expect = 6e-18
Identities = 38/106 (35%), Positives = 62/106 (58%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C +E++++ P YD++R+G+ SPR +DVM+ G AL++ Y MP P+ V
Sbjct: 27 CDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQGPAMRSTGKALQRAYAAMPGPKLVF 86
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGV 682
++GSCA ++++PV+ YVPGCPP EA+++GV
Sbjct: 87 AIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPGCPPRPEAIIWGV 132
>UniRef50_P16433 Cluster: Formate hydrogenlyase subunit 7; n=57;
Bacteria|Rep: Formate hydrogenlyase subunit 7 -
Escherichia coli (strain K12)
Length = 255
Score = 93.1 bits (221), Expect = 6e-18
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKM-APALRKVYDQMPDPRWV 541
C +E+ +P +D +R+G+ SPR +D+++ G +T M +PALR + PDP+
Sbjct: 51 CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPDPKIC 109
Query: 542 ISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 679
IS G+C N D+IVPVD+Y+PGCPPT A LYG
Sbjct: 110 ISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
>UniRef50_A1RWL1 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Thermofilum pendens Hrk 5|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit - Thermofilum
pendens (strain Hrk 5)
Length = 245
Score = 91.9 bits (218), Expect = 1e-17
Identities = 38/106 (35%), Positives = 60/106 (56%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C +E+ P +D++R GV SPR +DV++V G +T + P L+ Y+ P P V+
Sbjct: 30 CDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTGPVTRQFLPVLKATYEAAPKPCVVV 89
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGV 682
+ G+CA D+++PVD+Y+PGCPP A+L+GV
Sbjct: 90 ACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCPPRPHAILHGV 135
>UniRef50_A5FR05 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=12; cellular organisms|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Dehalococcoides sp.
BAV1
Length = 155
Score = 91.5 bits (217), Expect = 2e-17
Identities = 38/107 (35%), Positives = 63/107 (58%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C +E++ P YD++R+G+V +P+ SDV++V G + LR +Y+QMP+P+ VI
Sbjct: 25 CDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGPANKRNYRVLRNLYEQMPEPKVVI 84
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVL 685
+G+C D+++PVD+YVPGC EA++ GV+
Sbjct: 85 VIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAARPEAIIDGVV 131
>UniRef50_Q57936 Cluster: Uncharacterized protein MJ0516; n=15;
Euryarchaeota|Rep: Uncharacterized protein MJ0516 -
Methanococcus jannaschii
Length = 148
Score = 91.5 bits (217), Expect = 2e-17
Identities = 38/118 (32%), Positives = 72/118 (61%)
Frame = +2
Query: 347 TFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 526
T G C +E++ APRYD+++YG+ +PR++DV++V G +T + A L+++Y++ P
Sbjct: 18 TGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKTP 77
Query: 527 DPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
+P+ V+++G+CA D+++PVD +PGCPP ++ +L++ K
Sbjct: 78 EPKIVVAVGACA-LSGGIFKEGHVVGGVDKVIPVDAKIPGCPPRPSEIIETILKVAPK 134
>UniRef50_Q0W6T1 Cluster: [NiFe]-hydrogenase, small subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep:
[NiFe]-hydrogenase, small subunit - Uncultured
methanogenic archaeon RC-I
Length = 135
Score = 89.8 bits (213), Expect = 6e-17
Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Frame = +2
Query: 353 GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDP 532
G C +E++ PRYD++R GV SPR +DV++V G + P L +VY Q P+P
Sbjct: 17 GCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPLHTKPFLERVYAQTPEP 76
Query: 533 RWVISMGS--CANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQL 691
+ VI++G+ C+ D+I+PVD+ +PGCPP EA++ G++++
Sbjct: 77 KRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPKPEAIMEGIIKV 131
>UniRef50_Q7WT80 Cluster: EchC; n=2; Deltaproteobacteria|Rep: EchC -
Desulfovibrio gigas
Length = 147
Score = 89.0 bits (211), Expect = 1e-16
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Frame = +2
Query: 305 DLLNWGRKGSLWPMTFGLA-C--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGT 475
D + R S W M F C C +E + P +G+V +P+ +D++IV+GT
Sbjct: 6 DFIKSSRIKSPWLMHFDCGFCNGCDIETLACLDPHLRRGTFGIVNVGNPKHADILIVSGT 65
Query: 476 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 655
+ ++ L +Y+QMP P+ V+++G+C D+++PVD YVPGCPP
Sbjct: 66 VNHRNKKVLANLYEQMPHPKVVVAIGACGLSGGVFREAPNVVGGIDKVIPVDAYVPGCPP 125
Query: 656 TAEALLYG-VLQLQK 697
EA++ G VL LQK
Sbjct: 126 KPEAIIDGVVLGLQK 140
>UniRef50_A7CX02 Cluster: NADH ubiquinone oxidoreductase 20 kDa
subunit; n=1; Opitutaceae bacterium TAV2|Rep: NADH
ubiquinone oxidoreductase 20 kDa subunit - Opitutaceae
bacterium TAV2
Length = 294
Score = 89.0 bits (211), Expect = 1e-16
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 3/146 (2%)
Frame = +2
Query: 263 DASNMAEMAVARLDDLLN--WGRKGSLWPMTFG-LACCAVEMMHIAAPRYDMDRYGVVFR 433
D S A LD+ L +GR L ++ G C ++ + +D+ R+G+ F
Sbjct: 120 DPSREQIRLAAALDEKLRKLFGRSLKLRQVSAGGCNACEADVNVLGTIGWDLSRFGIQFV 179
Query: 434 ASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCD 613
ASPR +D +++ G ++ M AL+K +D +PDP+ VI+ G+CA
Sbjct: 180 ASPRHADGLLITGPVSQGMELALKKTWDAVPDPKLVIATGACAISGGPFAGNPQILGGAS 239
Query: 614 RIVPVDIYVPGCPPTAEALLYGVLQL 691
+VPVD+Y+PGCPP +L G+L+L
Sbjct: 240 AVVPVDLYIPGCPPHPLTILDGLLRL 265
>UniRef50_A6Q6W5 Cluster: Ni-Fe hydrogenase, small subunit HycG;
n=2; unclassified Epsilonproteobacteria|Rep: Ni-Fe
hydrogenase, small subunit HycG - Sulfurovum sp. (strain
NBC37-1)
Length = 168
Score = 87.8 bits (208), Expect = 2e-16
Identities = 39/112 (34%), Positives = 62/112 (55%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C E ++ P YD++R G+ F ASPR +DVM++ G +T M P + Y Q+P+P+WVI
Sbjct: 56 CEAECNALSNPYYDLERLGIYFVASPRHADVMLLNGLMTFNMTPHVLDAYKQIPEPKWVI 115
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
++G+C +PV ++PGCPP ++ G+L+ KK
Sbjct: 116 TLGACPVMEAPFEKTFAVKAPAADHLPVAHHIPGCPPEPLEIIRGLLEFLKK 167
>UniRef50_A5FPI3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=4; cellular organisms|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Dehalococcoides sp.
BAV1
Length = 171
Score = 87.4 bits (207), Expect = 3e-16
Identities = 39/109 (35%), Positives = 66/109 (60%)
Frame = +2
Query: 371 VEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISM 550
+E+ +++ P YD++R+G+ F ASPR +D++IV G +T MA A+RK +D MP P+ VI++
Sbjct: 58 IELNNLSNPYYDVERFGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSPKLVIAL 117
Query: 551 GSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQK 697
G A D+I+PV++ +PG PP ++ +L L +
Sbjct: 118 GDDACSGGIASGGYGVLGGVDKILPVNLKIPGNPPEPAQIINSLLGLMQ 166
>UniRef50_Q9UYN6 Cluster: Hydrogenase 4, component I or formate
hydrogen lyase, subunit 7; n=1; Pyrococcus abyssi|Rep:
Hydrogenase 4, component I or formate hydrogen lyase,
subunit 7 - Pyrococcus abyssi
Length = 271
Score = 86.2 bits (204), Expect = 7e-16
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 14/123 (11%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM-PDPRWV 541
C +E++ + P YD++R G+ +PR +D +++ G LT + A++K Y+ M P PR V
Sbjct: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
Query: 542 ISMGSCA-------------NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGV 682
+++G+CA N + +VPVD+Y+PGCPP+ E +LYG+
Sbjct: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
Query: 683 LQL 691
QL
Sbjct: 140 AQL 142
>UniRef50_P72317 Cluster: CooL; n=8; Bacteria|Rep: CooL -
Rhodospirillum rubrum
Length = 142
Score = 85.8 bits (203), Expect = 9e-16
Identities = 37/107 (34%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Frame = +2
Query: 365 CAVEMMHIAA-PRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWV 541
C VE+ A PRYD++R G + SP+ +D+++V G LT ++ + +VY+++PDP+
Sbjct: 25 CDVELATTACIPRYDVERLGCQYCGSPKHADIVLVTGPLTARVKDKVLRVYEEIPDPKVT 84
Query: 542 ISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGV 682
+++G C DR +PVD+ VPGCPP +A++ G+
Sbjct: 85 VAIGVCPISGGVFRESYSIVGPIDRYLPVDVNVPGCPPRPQAIIEGI 131
>UniRef50_Q58758 Cluster: Uncharacterized protein MJ1363; n=9;
Euryarchaeota|Rep: Uncharacterized protein MJ1363 -
Methanococcus jannaschii
Length = 151
Score = 85.8 bits (203), Expect = 9e-16
Identities = 40/126 (31%), Positives = 74/126 (58%), Gaps = 8/126 (6%)
Frame = +2
Query: 347 TFGLACCAVEMMH-IAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 523
T G C +E+++ I +P YD ++Y V +PR++D+++V G +T +A +LRK+Y+++
Sbjct: 21 TGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVAESLRKIYEKI 80
Query: 524 PDPRWVISMGSCA-------NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGV 682
P+P+ V+++G+CA N + I+PVD+ VPGC P E ++ G+
Sbjct: 81 PEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDIIAGI 140
Query: 683 LQLQKK 700
++ K
Sbjct: 141 VKALPK 146
>UniRef50_A6DB47 Cluster: HYDROGENASE-Ni,Fe-hydrogenase III small
subunit; n=3; Epsilonproteobacteria|Rep:
HYDROGENASE-Ni,Fe-hydrogenase III small subunit -
Caminibacter mediatlanticus TB-2
Length = 280
Score = 84.6 bits (200), Expect = 2e-15
Identities = 35/106 (33%), Positives = 58/106 (54%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C +E+ P +D +R+G ASPR +D+++ G LT +M L + Y+ PDP+ VI
Sbjct: 46 CEIEIFAAITPMWDPERFGFKLVASPRHADILLCTGPLTRQMYYPLLRAYEATPDPKVVI 105
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGV 682
++G+C D +PVD+Y+PGCPP +++G+
Sbjct: 106 AVGACGCTGGIFHDSYAVWSGIDSTLPVDVYIPGCPPHPATIIHGL 151
>UniRef50_A5FW47 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit precursor; n=1; Acidiphilium cryptum JF-5|Rep:
NADH ubiquinone oxidoreductase, 20 kDa subunit precursor
- Acidiphilium cryptum (strain JF-5)
Length = 264
Score = 84.2 bits (199), Expect = 3e-15
Identities = 37/107 (34%), Positives = 60/107 (56%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C E+ + P Y++ R G+ F SPR +D+++V G +T M LR+ ++ MP PRWV+
Sbjct: 141 CESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRAMLEPLRRTWEAMPAPRWVM 200
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVL 685
+ G+CA + +PVD+Y+PGCPP A++ +L
Sbjct: 201 ASGTCA-VSGGIAPGGPCLSGLEEALPVDLYLPGCPPNPAAIIEALL 246
>UniRef50_Q12F15 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=11; Proteobacteria|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Polaromonas sp. (strain
JS666 / ATCC BAA-500)
Length = 181
Score = 83.8 bits (198), Expect = 4e-15
Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Frame = +2
Query: 245 PYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLAC--CAVEMMHIAAPRYDMDRY 418
P DA A + R D LL G+ ++ + G +C C +E+ + P Y+++
Sbjct: 17 PAPGIDDAQRTAIERIHR-DILLILGQALTIRAVDAG-SCNGCELEIHALNNPYYNIEGL 74
Query: 419 GVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXX 598
G+ F ASPR +D+++V G ++ M ALR+ YD P+P+ V+++G C
Sbjct: 75 GIKFVASPRHADMLLVTGPVSRHMDEALRRTYDATPEPKLVVAVGDCGCTGGIFGDSYAS 134
Query: 599 XXXCDRIVPVDIYVPGCPPTAEALLYGVL 685
++PVD+ VPGCPP +L G+L
Sbjct: 135 CGRVANVIPVDVTVPGCPPPPIEILRGIL 163
>UniRef50_A7BSF1 Cluster: NADH-plastoquinone oxidoreductase subunit
K; n=1; Beggiatoa sp. PS|Rep: NADH-plastoquinone
oxidoreductase subunit K - Beggiatoa sp. PS
Length = 250
Score = 82.6 bits (195), Expect = 8e-15
Identities = 42/131 (32%), Positives = 68/131 (51%)
Frame = +2
Query: 299 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 478
+D + + R SL+ + + C A+E+ R+D +R G+ +PRQ+D++++ G L
Sbjct: 34 IDRIADRCRSRSLFILHYCTGCGAIELPPTITSRFDAERLGIQPMVTPRQADILLITGYL 93
Query: 479 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPT 658
+ K + Y+QM P++VI MGSC +PVD+Y+ GC P
Sbjct: 94 SVKTLKRVILSYEQMQAPKYVIGMGSCTINGGMYWHSYATVKRLQEYMPVDMYMAGCMPR 153
Query: 659 AEALLYGVLQL 691
EA+L G LQL
Sbjct: 154 PEAILEGFLQL 164
>UniRef50_Q24ST9 Cluster: Formate hydrogenlyase subunit 7; n=2;
Desulfitobacterium hafniense|Rep: Formate hydrogenlyase
subunit 7 - Desulfitobacterium hafniense (strain Y51)
Length = 155
Score = 80.2 bits (189), Expect = 5e-14
Identities = 37/110 (33%), Positives = 60/110 (54%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C EM + P YD+ R+G+ F ASPR +D+++ G ++ + A Y+ P+P+ +I
Sbjct: 46 CDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQAALATYEGTPNPKRII 105
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQ 694
++G CA +PVDI +PGCPP+ + LL +LQL+
Sbjct: 106 AVGDCALDGGMFKEAYAAHNGVGEALPVDIKIPGCPPSPDELLKVLLQLK 155
>UniRef50_A2YHL1 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 135
Score = 77.8 bits (183), Expect = 2e-13
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = +2
Query: 356 LACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 508
LA CAVEMMH A YD DR+ V+FR SPRQSD MI+ GTLTNKM PAL K
Sbjct: 58 LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPALGK 108
>UniRef50_A4YGN5 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Metallosphaera sedula DSM 5348|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit -
Metallosphaera sedula DSM 5348
Length = 203
Score = 77.8 bits (183), Expect = 2e-13
Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Frame = +2
Query: 335 LWPMTFGLAC--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 508
L+P+ G +C C +E+ I++P+YDM R+G+ F +P+ +D +++ G L +M +R+
Sbjct: 86 LYPLDAG-SCGGCNLELRLISSPQYDMTRFGIFFTNTPKHADALLIMGNLGKRMEEVIRR 144
Query: 509 VYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQ 688
YD +P P+ VI +G+CA + D+ VPGCPPT ++L +++
Sbjct: 145 AYDVIPSPKLVILLGTCAISGGVTGIPPD--------IRGDVIVPGCPPTPASILDALIK 196
>UniRef50_A7HGW9 Cluster: NADH ubiquinone oxidoreductase 20 kDa
subunit; n=12; cellular organisms|Rep: NADH ubiquinone
oxidoreductase 20 kDa subunit - Anaeromyxobacter sp.
Fw109-5
Length = 256
Score = 77.4 bits (182), Expect = 3e-13
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C E+ ++D+ R+G+ F ASPR +D ++V G ++ M AL+K Y+ +P PR VI
Sbjct: 140 CEAELNAAGNIQFDLGRFGIQFVASPRHADGIVVTGPVSENMRLALQKTYEAVPAPRLVI 199
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVP---VDIYVPGCPPTAEALLYGVLQL 691
++G+CA +P VD+YVPGCPP L G+L++
Sbjct: 200 AVGACAISGGVFRESPVSCGGAAAALPGVRVDLYVPGCPPHPITFLDGMLRM 251
>UniRef50_A1SQ82 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=10; Actinomycetales|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Nocardioides sp.
(strain BAA-499 / JS614)
Length = 162
Score = 77.4 bits (182), Expect = 3e-13
Identities = 37/103 (35%), Positives = 53/103 (51%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C +E+ P YD +RYG ASPR +DV++V G +T+ M LR+ + P PR V+
Sbjct: 51 CEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNMLEPLRRTVEATPRPRLVL 110
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALL 673
++G CA V VD+ VPGCPP A++
Sbjct: 111 AVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIV 153
>UniRef50_Q21TB3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Rhodoferax ferrireducens T118|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit - Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
Length = 254
Score = 74.9 bits (176), Expect = 2e-12
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Frame = +2
Query: 353 GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDP 532
G + C +E+ ++ +D+ RYG+ ASPR +D ++++G +T MA AL+ +D +P+P
Sbjct: 137 GCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALVLSGPITRNMAQALQICWDAIPEP 196
Query: 533 RWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQL 691
+ VI++G+CA + D P +YVPGCP + G++ L
Sbjct: 197 KLVIAVGACAISGGVFADSDALDRQFLDNFKPA-LYVPGCPAHPLTFISGIMDL 249
>UniRef50_UPI0000E81815 Cluster: PREDICTED: hypothetical protein;
n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 187
Score = 72.9 bits (171), Expect = 7e-12
Identities = 33/48 (68%), Positives = 34/48 (70%)
Frame = +2
Query: 557 CANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
CAN CDRIVPVDIYVPGCPPTAEALLYG+LQLQKK
Sbjct: 127 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKK 174
Score = 37.1 bits (82), Expect = 0.42
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 239 KRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACC 367
K+ Y P ++ E V +LDDL+NW R+ SLWP C
Sbjct: 71 KKSYVP----TSRGEYIVTKLDDLINWARRTSLWPSMLAQQNC 109
>UniRef50_Q978D5 Cluster: Formate hydrogenlyase subunit 2; n=2;
Thermoplasmatales|Rep: Formate hydrogenlyase subunit 2 -
Thermoplasma volcanium
Length = 222
Score = 69.3 bits (162), Expect = 8e-11
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Frame = +2
Query: 323 RKGSLWPMTFGLAC--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAP 496
R ++P+ G AC C +E + I +P+YD +R G+ +PR +D +IV G +T M
Sbjct: 87 RSFHVFPIDSG-ACGACNMEFLSIFSPQYDANRLGIFMVNTPRYADALIVMGVMTPGMKE 145
Query: 497 ALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALL 673
AL + Y+ MP+P+ VI+MG+CA DR ++ + GCPP+ L+
Sbjct: 146 ALDRAYEAMPEPKLVIAMGACA-----VTGGIMGENPLDR-EKYNVEIAGCPPSPYTLI 198
>UniRef50_A5FW77 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Acidiphilium cryptum JF-5|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit - Acidiphilium
cryptum (strain JF-5)
Length = 164
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/109 (28%), Positives = 51/109 (46%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C +E+ R M +G+ R +D+++V G T +A A+RK M PR+V+
Sbjct: 39 CEIEIAACRRLRGGMAAHGIAMVEDLRAADILLVTGVATRNLAEAVRKSLAGMAPPRFVV 98
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQL 691
+ G CA ++PVD+ + GCPP +L G++ L
Sbjct: 99 AAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILAGLVAL 147
>UniRef50_Q0BPG7 Cluster: Formate hydrogenlyase subunit 7; n=1;
Granulibacter bethesdensis CGDNIH1|Rep: Formate
hydrogenlyase subunit 7 - Granulobacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1)
Length = 174
Score = 63.3 bits (147), Expect = 6e-09
Identities = 31/113 (27%), Positives = 57/113 (50%)
Frame = +2
Query: 353 GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDP 532
G + C +E+ + A + R+G+ F SP +D++++ G + + A+ + ++ MP P
Sbjct: 55 GGSACLLELEALRAAPGLLARHGLRFVTSPLHADILLITGDGCHNLTSAIHQAWEAMPGP 114
Query: 533 RWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQL 691
RW I++G A + I P D+ +PG PP A+ +L G+ L
Sbjct: 115 RWAIAVGDGAAGDGLLRGSYASTGNMEEI-PFDLVIPGSPPAADTILSGLRAL 166
>UniRef50_A6DAC3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Caminibacter mediatlanticus TB-2|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit - Caminibacter
mediatlanticus TB-2
Length = 140
Score = 60.5 bits (140), Expect = 4e-08
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Frame = +2
Query: 365 CAVEMM-HIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWV 541
C VE+ + + R+D+ + G + + +D+ ++ G +T + P L++V P V
Sbjct: 20 CDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFLKEVIKNHKKPYVV 79
Query: 542 ISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGV 682
IS+G+C+ D V VD+ V GCPP +A+L GV
Sbjct: 80 ISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGV 126
>UniRef50_A3ETD3 Cluster: Ni,Fe-hydrogenase III small subunit; n=1;
Leptospirillum sp. Group II UBA|Rep: Ni,Fe-hydrogenase
III small subunit - Leptospirillum sp. Group II UBA
Length = 169
Score = 60.1 bits (139), Expect = 5e-08
Identities = 31/111 (27%), Positives = 54/111 (48%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C +E+ + Y +R G+ F ASPR +D+++V G ++ +M L ++ M P+ V+
Sbjct: 49 CELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQMEQPLLDTHEAMASPKTVL 108
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQLQK 697
++G CA D + P VPGCPP+ +L + L +
Sbjct: 109 AVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDILRALRGLSR 159
>UniRef50_UPI00015BC86C Cluster: UPI00015BC86C related cluster; n=1;
unknown|Rep: UPI00015BC86C UniRef100 entry - unknown
Length = 165
Score = 59.3 bits (137), Expect = 9e-08
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C E+ ++ YD++R+G+ F ASP+ DV+ + G +T M L P+P+ +I
Sbjct: 53 CEYELTALSNVFYDIERFGIKFVASPKHVDVLTITGPITRNMYKPLLDAIQNTPNPKVII 112
Query: 545 SMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQ 688
++G C+ + D + I + GCPP ++ G+L+
Sbjct: 113 AIGDCSIDGGLFKGAYGIVGGLKDINIEPHILIRGCPPHPRDIISGILK 161
>UniRef50_Q6L0U2 Cluster: Formate hydrogenlyase subunit 7; n=3;
cellular organisms|Rep: Formate hydrogenlyase subunit 7
- Picrophilus torridus
Length = 202
Score = 59.3 bits (137), Expect = 9e-08
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C E+ I+ P YD+ RY + F +PR +D +I++G M + MP P ++I
Sbjct: 100 CNSELFSISIPEYDLTRYHIFFTNTPRHADAIILSGIYNESMKDVIDNALGAMPKPGYLI 159
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQL 691
+G+CA + + +PGCPP +L G+ +L
Sbjct: 160 LLGACA--------LSGGIIGSGHEIKAVLEIPGCPPNPYTILKGLRRL 200
>UniRef50_A2XI26 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 581
Score = 52.8 bits (121), Expect = 8e-06
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +2
Query: 266 ASNMAEMAVARLDDLLNWGRKGSLWPMTFGLA 361
AS E ++++DDL+NW R+GS+WPMTFGLA
Sbjct: 474 ASKAVEFVISKVDDLMNWARRGSIWPMTFGLA 505
>UniRef50_A0LSU0 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Acidothermus cellulolyticus 11B|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit - Acidothermus
cellulolyticus (strain ATCC 43068 / 11B)
Length = 269
Score = 51.2 bits (117), Expect = 2e-05
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Frame = +2
Query: 374 EMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMG 553
E++ + P YD+ R G+ F ASPR +DV++V G + MA L + P P VI+ G
Sbjct: 141 EVLALLNPVYDIHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIAAG 200
Query: 554 SCA-NXXXXXXXXXXXXXXCDRI-----------------VPVDIYVPGCPPTAEALLYG 679
+ A + D I V VDI+VPG PPT ALL+
Sbjct: 201 TDAISGGLVHPTYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPTPFALLHA 260
Query: 680 VL 685
+L
Sbjct: 261 LL 262
>UniRef50_Q5FU78 Cluster: Putative uncharacterized protein; n=1;
Gluconobacter oxydans|Rep: Putative uncharacterized
protein - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 161
Score = 50.8 bits (116), Expect = 3e-05
Identities = 26/113 (23%), Positives = 54/113 (47%)
Frame = +2
Query: 353 GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDP 532
G C +E+ + + +++ G V + P +D +++ G +T A + +V+ MP
Sbjct: 46 GCEGCFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVCAEMVDRVWRAMPPG 105
Query: 533 RWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGVLQL 691
R +I++G+CA + + PV + GCPP+ + +L + +L
Sbjct: 106 RSLIAVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSPDDILRALQEL 158
>UniRef50_Q6A6I9 Cluster: NADH dehydrogenase subunit; n=1;
Propionibacterium acnes|Rep: NADH dehydrogenase subunit
- Propionibacterium acnes
Length = 132
Score = 42.7 bits (96), Expect = 0.008
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Frame = +2
Query: 311 LNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKM 490
++W GS++ + LACC VE AA + + +P V++V+GT+T +
Sbjct: 4 IDWFADGSVYVVDLALACCGVESG--AAVLANAPVREEIPDGAP---IVVLVSGTVTTGL 58
Query: 491 APALRKVYDQMP--DPRWVISMGSCANXXXXXXXXXXXXXXC-DRIVPVDIYVPGCPPTA 661
AP + ++ P V++ G+CA D V D ++PGCPP
Sbjct: 59 APVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPPGP 118
Query: 662 EAL 670
E L
Sbjct: 119 ETL 121
>UniRef50_A7QEP9 Cluster: Chromosome chr16 scaffold_86, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr16 scaffold_86, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 98
Score = 37.5 bits (83), Expect = 0.32
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 485 KMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVP 643
KM P L ++Y Q+P+ ++VI+ G+C D++ PVD+Y P
Sbjct: 2 KMTPPLMRLYKQIPELKYVIATGTCM-ITEDILIVYSTVRGVDKLTPVDVYSP 53
>UniRef50_Q6XQK2 Cluster: HoxY; n=5; Proteobacteria|Rep: HoxY -
Thiocapsa roseopersicina
Length = 180
Score = 36.7 bits (81), Expect = 0.55
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +2
Query: 617 IVPVDIYVPGCPPTAEALLYGVLQL 691
+V VD++VPGCPP+A+A+ Y + +L
Sbjct: 140 VVGVDVFVPGCPPSADAIWYVLSEL 164
>UniRef50_Q44515 Cluster: Hydrogenase small subunit; n=31;
Bacteria|Rep: Hydrogenase small subunit - Anabaena
variabilis
Length = 205
Score = 35.5 bits (78), Expect = 1.3
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 617 IVPVDIYVPGCPPTA 661
IVPVDIY+PGCPP+A
Sbjct: 164 IVPVDIYLPGCPPSA 178
>UniRef50_A0LLU1 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Syntrophobacter fumaroxidans MPOB|Rep:
NADH ubiquinone oxidoreductase, 20 kDa subunit -
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Length = 184
Score = 35.5 bits (78), Expect = 1.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 614 RIVPVDIYVPGCPPTAEALLYGVLQLQK 697
+++PVDI++PGCPP E + ++ L K
Sbjct: 143 QVIPVDIFLPGCPPDPERIWAAIVALLK 170
>UniRef50_Q59113 Cluster: Hydrogenase small beta subunit; n=1;
Acetomicrobium flavidum|Rep: Hydrogenase small beta
subunit - Acetomicrobium flavidum
Length = 179
Score = 35.1 bits (77), Expect = 1.7
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 611 DRIVPVDIYVPGCPPTAEALLY 676
D V VD+YVPGCPP A+ + Y
Sbjct: 137 DYEVKVDVYVPGCPPDADTIYY 158
>UniRef50_Q0FXV5 Cluster: Putative uncharacterized protein; n=1;
Fulvimarina pelagi HTCC2506|Rep: Putative
uncharacterized protein - Fulvimarina pelagi HTCC2506
Length = 391
Score = 34.7 bits (76), Expect = 2.2
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 434 ASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPR 535
ASPR + + ++AG + + LR+++DQMP PR
Sbjct: 28 ASPRHAAIFLIAGRMRLEDREDLRRLHDQMPHPR 61
>UniRef50_Q85WY3 Cluster: ORF82a; n=1; Pinus koraiensis|Rep: ORF82a
- Pinus koraiensis (Korean pine)
Length = 82
Score = 33.9 bits (74), Expect = 3.9
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +2
Query: 611 DRIVPVDIYVPGCPPTAEALLYGVLQLQKK 700
D+++PVD+Y P CP E ++ + +L+++
Sbjct: 46 DKLIPVDVYSPDCPTEPEVIIDAITKLRER 75
>UniRef50_A7S1C1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1357
Score = 33.9 bits (74), Expect = 3.9
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = -1
Query: 503 SKLEPFCLLKFLLQSLHQTDGEMLGILRHIGPYHSEVQQYASSLQRSKLDQRSWAKGNLS 324
++L F L+F + GEM+ +LR PY +++ +++ K +Q+ AK +
Sbjct: 652 NELHAFLKLRFHAPGIGLKQGEMVPLLRQ-SPYRDTIKEVKKRVKQEKKEQKKAAKQQAN 710
Query: 323 SPNSISHQVEPQ 288
+ ++ EP+
Sbjct: 711 TMRNLERTKEPR 722
>UniRef50_Q8ZL73 Cluster: Putative cytoplasmic protein; n=10;
cellular organisms|Rep: Putative cytoplasmic protein -
Salmonella typhimurium
Length = 651
Score = 33.5 bits (73), Expect = 5.1
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +2
Query: 368 AVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 523
A+E IAA + D YG+VF+ S + VA +L K PAL K D++
Sbjct: 49 AIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPALEKTADEV 100
>UniRef50_A5UWN9 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=2; Roseiflexus|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Roseiflexus sp. RS-1
Length = 127
Score = 33.1 bits (72), Expect = 6.8
Identities = 23/106 (21%), Positives = 46/106 (43%)
Frame = +2
Query: 365 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 544
C +E++ A D+D + A+P ++DV+++ G LT A + ++ +I
Sbjct: 15 CDLEVIAALAAAADID-----WAATPHEADVLLLTGPLTTDTKKAFMALLQELDHRAPII 69
Query: 545 SMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGV 682
++G CA + V + + GCPPT ++ +
Sbjct: 70 AVGRCAIDGHPFGRGGVAVIP---NLTVHLSLDGCPPTPTQIVEAI 112
>UniRef50_Q2H944 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized protein
- Chaetomium globosum (Soil fungus)
Length = 1303
Score = 33.1 bits (72), Expect = 6.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 212 HLPAPNPTEKRPYSPFQDASNMAEMAVARLDDL 310
H P P P E+R Q A N+A+++VAR D++
Sbjct: 1070 HPPVPRPMEQRSVEELQAALNLAQLSVARDDNV 1102
>UniRef50_A5Z5F5 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 849
Score = 32.7 bits (71), Expect = 9.0
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 314 NWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVM--IVAGTLTNK 487
NW +KG + + L+ V + + YD + Y +F AS Q D M ++ T N
Sbjct: 438 NW-KKGLIVMFSIALSMVVVNYIVMLVQGYDFESYRNIFLASDFQLDQMTDTLSNTNFNG 496
Query: 488 MAPALRKVYDQMPD 529
+ P ++++ ++ P+
Sbjct: 497 ITPEIKEILNKCPE 510
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 737,626,699
Number of Sequences: 1657284
Number of extensions: 15141665
Number of successful extensions: 36629
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 35344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36523
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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