Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E07_e53_09.seq
         (1551 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q14NU4 Cluster: Putative trna pseudouridine synthase b ...    35   6.6  

>UniRef50_Q14NU4 Cluster: Putative trna pseudouridine synthase b
           protein; n=1; Spiroplasma citri|Rep: Putative trna
           pseudouridine synthase b protein - Spiroplasma citri
          Length = 303

 Score = 34.7 bits (76), Expect = 6.6
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +3

Query: 147 IKGQDITLKSFRTKFYNNHELFIFFSAFCTFKTIILNLLVQYKFKFKKVIN*RLFC--LH 320
           IK + +T+K+ + K Y+ H   I FS  CT  T I +L+     K   +      C    
Sbjct: 141 IKPRTVTIKAIKLKKYDAHNHTIKFSVLCTKGTYIRSLVTDIAAKLNTIATVTALCRTQS 200

Query: 321 GETIKTKSIQW*KPPPISFSSL 386
           G  + +K+I    P  ++F+ L
Sbjct: 201 GNFLLSKAI---SPETVNFNEL 219


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,386,041
Number of Sequences: 1657284
Number of extensions: 11904363
Number of successful extensions: 18604
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 18057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18600
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 166151143700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)