Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30106
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    25   0.87 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.1  

>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 502 GENSVGYVYGLIYLSSPSSQATGSA 576
           G+N V YV+ L YLS  +S     A
Sbjct: 196 GKNCVTYVFDLFYLSKRASDLCNEA 220


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 39  RLTQRSSRNKPKPVKPTKRPSLSP 110
           R T +++R  P P++  K  SLSP
Sbjct: 257 RTTLKNNRASPYPMQRPKSASLSP 280


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 54   SSRNKPKPVKPTKRPSLSPEGTATKTS 134
            S+ +  KP KP+ RP  +     TKT+
Sbjct: 1162 STSSWQKPTKPSYRPPSTTNHWQTKTT 1188


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 57  SRNKPKPVKPTK 92
           SR KP+P +PT+
Sbjct: 261 SRRKPRPPRPTQ 272


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 610 AFRYHKHWSPSSPNPSLATKGSTSKLTHRHSPLSSRRIFSV 488
           +F    H S  SP+ +   K STS     H    S+ + S+
Sbjct: 48  SFSMGGHGSLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSI 88


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 223 VGREIRSDPPEKEMVGGVLSPCVLGHRRTPEVFVAVP 113
           VGR    DP  K  +   L+ C+   ++ P+V V VP
Sbjct: 121 VGRFPGLDPVVKRRLLQHLASCLNQGQKEPQVQVIVP 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,382
Number of Sequences: 336
Number of extensions: 3126
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)