Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30096
         (806 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.0  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   6.6  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = -3

Query: 240 ELESIESGTQRAAVLASFPFTENSGVLSTTVLVCYKILIFYVS*YFTCFCNAAACKTSV 64
           E++ +  GT    +    P  +++ + S  +   Y +LI   + YF       ACK  +
Sbjct: 345 EIKPVLGGTALPDISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAYIFGKFACKIMI 403


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = -3

Query: 240 ELESIESGTQRAAVLASFPFTENSGVLSTTVLVCYKILIFYVS*YFTCFCNAAACKTSV 64
           E++ +  GT    +    P  +++ + S  +   Y +LI   + YF       ACK  +
Sbjct: 345 EIKPVLGGTALPDISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAYIFGKFACKIMI 403


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = -3

Query: 240 ELESIESGTQRAAVLASFPFTENSGVLSTTVLVCYKILIFYVS*YFTCFCNAAACKTSV 64
           E++ +  GT    +    P  +++ + S  +   Y +LI   + YF       ACK  +
Sbjct: 345 EIKPVLGGTALPDISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAYIFGKFACKIMI 403


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = -3

Query: 240 ELESIESGTQRAAVLASFPFTENSGVLSTTVLVCYKILIFYVS*YFTCFCNAAACKTSV 64
           E++ +  GT    +    P  +++ + S  +   Y +LI   + YF       ACK  +
Sbjct: 345 EIKPVLGGTALPDISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAYIFGKFACKIMI 403


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 371  SGAFVGHFSFSSFTVCV 321
            SG +  H S SSF VCV
Sbjct: 1209 SGQYYPHESCSSFYVCV 1225


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 173 IAGSLAQPSSSVTRYSFSTLVDTSLVF 93
           IA     P  ++T+Y     VD S+VF
Sbjct: 197 IAALFTSPILAITQYGPEEYVDGSIVF 223


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 616 PGYEPTSDRSR 584
           P YEPT D SR
Sbjct: 375 PSYEPTYDNSR 385


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,249
Number of Sequences: 336
Number of extensions: 3181
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)