Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30094
         (288 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   1.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   4.6  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   6.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    19   8.0  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    19   8.0  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 42  FFKGAFSNVLRGTGGAFVLVLYDEI 116
           F    ++  L  TGG  V+ L DEI
Sbjct: 507 FRPNTYNRFLAATGGDHVISLIDEI 531


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 121 FLISSYKTSTKAPPVPL 71
           FL ++Y    + PP+PL
Sbjct: 169 FLCNNYPPLPQVPPLPL 185


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 121 FLISSYKTSTKAPPVPL 71
           FL ++Y    + PP+PL
Sbjct: 169 FLCNNYLPLPQVPPLPL 185


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +3

Query: 138 RKNCYHNFYV 167
           +KN Y++FY+
Sbjct: 176 KKNLYYSFYI 185


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 147 CYHNFYVIPCRSHSPQIMY 203
           CY      P RSH  Q +Y
Sbjct: 309 CYKLMEKFPERSHEQQELY 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,565
Number of Sequences: 336
Number of extensions: 818
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5003479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)