Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30073
         (348 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   0.68 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   0.68 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   3.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   3.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   4.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   6.3  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    20   6.3  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    20   8.3  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 0.68
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 237 PHPRLQRSPCRLLRNPSRGQPGP 169
           PHP L   P  L  +P+   PGP
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGP 254



 Score = 21.0 bits (42), Expect = 3.6
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
 Frame = -1

Query: 264 ISLVSTLRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTL-----------PPPYPHRR 124
           +S +S+L  P   +  SP   + +PS     P+ L+  L           PPP+PH +
Sbjct: 687 LSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQ 744


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 0.68
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 237 PHPRLQRSPCRLLRNPSRGQPGP 169
           PHP L   P  L  +P+   PGP
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGP 146



 Score = 21.0 bits (42), Expect = 3.6
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
 Frame = -1

Query: 264 ISLVSTLRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTL-----------PPPYPHRR 124
           +S +S+L  P   +  SP   + +PS     P+ L+  L           PPP+PH +
Sbjct: 579 LSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQ 636


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -1

Query: 234 HPRLQRSPCRLL--RNPSRGQPGPH---GLRRTLPPPYP 133
           +PRLQR P  L+  R   R    P     +  T+PPP P
Sbjct: 180 YPRLQRCPAMLVFDRRSLRCVVPPTEDCDVPSTIPPPPP 218


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -1

Query: 228 RLQRSPCRLLRNPSRGQPGPHGLRRTLP-PPYP 133
           RL     + L NP   +P P  + R  P PP P
Sbjct: 238 RLTDEQLKELENPPTPKPRPTKVSRRKPRPPRP 270


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 154 SPKPVRTWLPSRRITKKSAWTPLKA 228
           S K V+ W  +RR+  K    P  A
Sbjct: 157 SEKQVKIWFQNRRVKYKKEDLPAAA 181


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 193 ITKKSAWTPLKARVREPK 246
           ITK   W   K  +RE K
Sbjct: 212 ITKLEQWNHSKVHIREDK 229


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 84  FDLMYAKRAFVHWY 125
           F   + KRA+V WY
Sbjct: 194 FQEPWGKRAYVTWY 207


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 239 SLTLAFSGVHADFFVILL 186
           +L   F G   D F+ILL
Sbjct: 528 NLQTTFGGTFGDTFIILL 545


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,786
Number of Sequences: 336
Number of extensions: 1237
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)