Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30039
(644 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 23 2.8
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 23 2.8
AM292326-1|CAL23138.2| 522|Tribolium castaneum gustatory recept... 23 2.8
AJ223614-1|CAA11490.1| 301|Tribolium castaneum orthodenticle-2 ... 22 5.0
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 21 6.6
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 21 6.6
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 21 8.7
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 21 8.7
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 21 8.7
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 21 8.7
AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein. 21 8.7
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 22.6 bits (46), Expect = 2.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 351 GLPTPVAGSLMMKIFVGV 404
GL + + G +MM +FVGV
Sbjct: 947 GLISAIYGLIMMAVFVGV 964
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
protein.
Length = 1464
Score = 22.6 bits (46), Expect = 2.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 351 GLPTPVAGSLMMKIFVGV 404
GL + + G +MM +FVGV
Sbjct: 947 GLISAIYGLIMMAVFVGV 964
>AM292326-1|CAL23138.2| 522|Tribolium castaneum gustatory receptor
candidate 5 protein.
Length = 522
Score = 22.6 bits (46), Expect = 2.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 106 TQSPIAAGIIFIFYHLLMTITSHYLSSL 189
T +A +IFI +H++ T + +L L
Sbjct: 241 TIETVAYSVIFILWHIVGTFSGIFLCDL 268
>AJ223614-1|CAA11490.1| 301|Tribolium castaneum orthodenticle-2
protein protein.
Length = 301
Score = 21.8 bits (44), Expect = 5.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 575 VECFVXKQYRSWFKLSWPSL 634
++ F +Q+RSW S P L
Sbjct: 224 IDSFTLEQHRSWCSSSQPVL 243
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 21.4 bits (43), Expect = 6.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -2
Query: 268 GSVVIRNIHKNHCR 227
GS +I H+N CR
Sbjct: 80 GSCIIDKTHRNQCR 93
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 21.4 bits (43), Expect = 6.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -2
Query: 268 GSVVIRNIHKNHCR 227
GS +I H+N CR
Sbjct: 80 GSCIIDKTHRNQCR 93
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.0 bits (42), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 164 LRHIIYPLFHTIVLFSILIYKSTVVFM 244
L+ + Y + IVL S +I K T++FM
Sbjct: 70 LKIVAYLVTFVIVLGSGVISKGTLLFM 96
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.0 bits (42), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 164 LRHIIYPLFHTIVLFSILIYKSTVVFM 244
L+ + Y + IVL S +I K T++FM
Sbjct: 70 LKIVAYLVTFVIVLGSGVISKGTLLFM 96
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 21.0 bits (42), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 164 LRHIIYPLFHTIVLFSILIYKSTVVFM 244
L+ + Y + IVL S +I K T++FM
Sbjct: 70 LKIVAYLVTFVIVLGSGVISKGTLLFM 96
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 21.0 bits (42), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 164 LRHIIYPLFHTIVLFSILIYKSTVVFM 244
L+ + Y + IVL S +I K T++FM
Sbjct: 70 LKIVAYLVTFVIVLGSGVISKGTLLFM 96
>AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein.
Length = 556
Score = 21.0 bits (42), Expect = 8.7
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 163 ITSHYLSSLPHNSPLFYTNI*IYSGFYGCSV*LLNHVSD*LE-TWYP 300
++ HY++ P +PLF + G ++ + V D L W P
Sbjct: 413 VSPHYVTPTPPEAPLFQNVLPPIGGMMNWNMPSTSVVGDMLNMNWNP 459
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,872
Number of Sequences: 336
Number of extensions: 3907
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -