Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10445
         (486 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   0.84 
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   2.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   4.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.9  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   7.9  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 134 DQRKC**NEKYRARCTYCRDWRSVQEG---RTCRKDDSRNLGRSTTQ 265
           +++ C  +++ R RC YCR  + +  G      +++  R   R T++
Sbjct: 124 EEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKDRDTSE 170


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = +3

Query: 54  YSLPVNSSAADVTAELTSDGYL-----VVTAPISENVDKTKNTERVVPIVETGAPYKKDE 218
           Y  P  +   D +A + ++G +       T P  E V K  +  + V  V  G  Y+K  
Sbjct: 147 YGKPEQNYEVDESASVMTNGRIHGIQPSPTLPSKEEVSKKIDDNQKVGYVVEGRNYRKYR 206

Query: 219 PVEKTT 236
             E+T+
Sbjct: 207 VEERTS 212


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 261 VVERPRFLLSSFLQVRPSCTE 199
           V+E+PR +L +F    P C +
Sbjct: 98  VIEKPRKVLPNFKTDEPICPD 118


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 135 ISENVDKTKNTERVVPIVETGAPYKKD 215
           I E V   +  +RVV  V+  A Y+K+
Sbjct: 164 IVETVYDPREDDRVVCYVQAAARYRKE 190


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 5/15 (33%), Positives = 8/15 (53%)
 Frame = +2

Query: 419 YTHLMISVFNKIFFC 463
           Y   ++  FN +F C
Sbjct: 438 YAQFIVGTFNSVFIC 452


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,510
Number of Sequences: 336
Number of extensions: 1442
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)