Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30134
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    25   0.46 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.1  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   1.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.4  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   3.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.6  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   5.6  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   7.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.8  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 506 QNEPINKPQPARIQPLSNRPQRP 574
           +N P  KP+P ++     RP RP
Sbjct: 248 ENPPTPKPRPTKVSRRKPRPPRP 270


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +3

Query: 306 NTPTAFSSSGYS-TPEPQNDFYDITTTSQPKPPIIFNPFPQSSPSPVKLDPIRPTQYRPS 482
           +T  A    G+  TP P     D TT+ +P P I   P P    SP+  +P   T    S
Sbjct: 57  STSAAADVDGWQVTPLPS----DGTTSPEPDPEIPVAPEPAPLASPLVQEPGSSTTSATS 112

Query: 483 S---PTPFNPIRTNQLTNLN 533
                +P  PI T+ +  ++
Sbjct: 113 GAVMASPPMPITTDNVAAIS 132


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 58  QNDSPIPP--RLQIPGAIPVGGPVRQGGFRQGRIAPVPGSI 174
           QN++P+P   R+ +P  +  G P   GG +     P PGS+
Sbjct: 108 QNNNPLPSPRRVAVPVLVRDGKPCLSGGPKH----PDPGSL 144


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 30  YAVCFNSLCTK*LSYSTETTNTRSHSC 110
           Y  C+N   T+ L       N R+HSC
Sbjct: 115 YWTCWNGTATEQLCIGGLLYNERTHSC 141


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 508 LIGLKGVGEDGLYCVGRMGSSLTGLGEDC 422
           ++G +G   DG++C G  GS   G    C
Sbjct: 183 IVGFEGGKGDGIFCPG--GSIANGYAISC 209


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 267 KPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKP 398
           +P  +EP D+YE +    +  S  +   P   F D+   +   P
Sbjct: 89  RPPPDEPIDDYEPSFDLFYYPSRQTLYTPVQYFKDLVAEAYVSP 132


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 655 SLSLVYCLTGWIFFFLFY 602
           +LS+ YC+ G+IF  + +
Sbjct: 42  NLSINYCICGYIFSAILF 59


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 420 PQSSPSPVKLDPIRPTQYRPSSPTPF 497
           P+  P P K DP R +     + TP+
Sbjct: 400 PEYYPDPEKYDPERFSDENKKNLTPY 425


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +3

Query: 411 NPFPQSSPSPVKLDPIRPTQYRPSSPTPFNPIR 509
           N  P  SP P  + P+     R   PT   P R
Sbjct: 215 NYSPSQSPEPESVRPLSLVVRRCEEPTEEKPWR 247


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 370 TSPPLLSQNHP*SLTRSHNLLLALSS*IPSVPRNTD 477
           T P   S N    +T S N+L  L+   P+V  N D
Sbjct: 109 TQPMCESLNTQPPVTSSSNILQNLADITPNVTPNCD 144


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 370 TSPPLLSQNHP*SLTRSHNLLLALSS*IPSVPRNTD 477
           T P   S N    +T S N+L  L+   P+V  N D
Sbjct: 109 TQPMCESLNTQPPVTSSSNILQNLADITPNVTPNCD 144


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 370 TSPPLLSQNHP*SLTRSHNLLLALSS*IPSVPRNTD 477
           T P   S N    +T S N+L  L+   P+V  N D
Sbjct: 109 TQPMCESLNTQPPVTSSSNILQNLADITPNVTPNCD 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,095
Number of Sequences: 336
Number of extensions: 3957
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)