Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30129
         (782 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   3.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   3.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   6.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   6.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 761  IPVPENCLVEFRCFTAKTEKFWATG 687
            +P P NC   +RC   +  K +  G
Sbjct: 1109 VPDPHNCNAYYRCVLGELRKQYCAG 1133


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 174 LNCRLCKQNIETAEATILHLLDEKH 248
           L C  CKQ+  +  A   H+ + KH
Sbjct: 378 LKCVWCKQSFPSLAAMTTHMKEAKH 402


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 324 DQRT*AGPSIWPAW 365
           +++T + P +WPAW
Sbjct: 180 EKKTESQPMLWPAW 193


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/58 (18%), Positives = 26/58 (44%)
 Frame = +1

Query: 586 FGNFYICSICPEYVGGASFANIVEHFRKQRTPWRPVAQNFSVLAVKQRNSTKQFSGTG 759
           F + ++C +C   +G  S A  + H  + +T    +     + +++  N   +F+  G
Sbjct: 292 FDSIHLCDVCYSTIGTVSKAGELIH--QIQTEDHDIIDEIEMFSLQIANEQVEFNAAG 347


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 364 HAGQILGPAQVLWSP 320
           H G  +GP Q +W P
Sbjct: 33  HQGAQMGPEQQMWEP 47


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 364 HAGQILGPAQVLWSP 320
           H G  +GP Q +W P
Sbjct: 33  HQGAQMGPEQQMWEP 47


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 399 MITWSRLLTGLPTLAKYLDQ 340
           +I WS  L+  P + KYLD+
Sbjct: 452 VIIWSSNLSKRPYIYKYLDK 471


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 535 ASLVPRYEGLLLTDMVEQDLSGPFQRHIAA 446
           A LVP +  L LTD V+   +G  +  IAA
Sbjct: 229 AKLVPHFTSLPLTDQVQLLRAGWNELLIAA 258


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 649  IVEHFRKQRTPWRPVAQN 702
            ++EH +K  T W  V+ N
Sbjct: 1525 VIEHKKKTSTEWIQVSNN 1542


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,237
Number of Sequences: 336
Number of extensions: 3993
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)