Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30113
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    25   0.80 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.4  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    24   1.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    24   1.4  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   5.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.9  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 441 NCEDPGKRRQMPVHYGS 491
           N +DP +RRQM V +GS
Sbjct: 266 NLKDPCRRRQMYVDFGS 282


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 378 EVGVFLYRGMTVTGLVNQCYGNCEDPGKRRQMPVHYGSKHH 500
           +VG++ +     T   +  Y    D    +QMP HY + H+
Sbjct: 4   DVGMYGHHSQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHY 44


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 378 EVGVFLYRGMTVTGLVNQCYGNCEDPGKRRQMPVHYGSKHH 500
           +VG++ +     T   +  Y    D    +QMP HY + H+
Sbjct: 4   DVGMYGHHSQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHY 44


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 378 EVGVFLYRGMTVTGLVNQCYGNCEDPGKRRQMPVHYGSKHH 500
           +VG++ +     T   +  Y    D    +QMP HY + H+
Sbjct: 4   DVGMYGHHSQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHY 44


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 1   LLSTRTRPETAQNGGGKIAEFPGARAPYVSEMKFFNETSY 120
           ++ TR+    A  GG  +A   GA  P    ++  NET +
Sbjct: 21  VVKTRSNSPEAGGGGFWLAAASGAPHPAALPIEGCNETGF 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 1   LLSTRTRPETAQNGGGKIAEFPGARAPYVSEMKFFNETSY 120
           ++ TR+    A  GG  +A   GA  P    ++  NET +
Sbjct: 21  VVKTRSNSPEAGGGGFWLAAASGAPHPAALPIEGCNETGF 60


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +1

Query: 451 IPGKGDRCRSITEASTT 501
           + G+GD CR + + +++
Sbjct: 52  VAGEGDNCRDVIQCTSS 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,903
Number of Sequences: 336
Number of extensions: 3836
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)