Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30111
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    24   1.0  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   4.2  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   4.2  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   4.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.6  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 376 LSDLRSLIDSVYSMEFKFKLRFGRTTR*LKFI 281
           + + ++ +D  Y M+ +F L F  +   +KFI
Sbjct: 694 VEEAKTFVDRCYKMQEQFTLNFRNSDELIKFI 725


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 641 GMAKRPFNTNITIVTGLKTWLKYYTPKIYKL 549
           G+   P N N+ + +  + W + Y P  Y L
Sbjct: 55  GVQISPPNENLVVTSSNRPWWERYQPVSYIL 85


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 641 GMAKRPFNTNITIVTGLKTWLKYYTPKIYKL 549
           G+   P N N+ + +  + W + Y P  Y L
Sbjct: 56  GVQISPPNENLVVTSSNRPWWERYQPVSYIL 86


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 641 GMAKRPFNTNITIVTGLKTWLKYYTPKIYKL 549
           G+   P N N+ + +  + W + Y P  Y L
Sbjct: 56  GVQISPPNENLVVTSSNRPWWERYQPVSYIL 86


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 456 KQREMTNLKSVKQINLLVIKMVKI 385
           ++R   NLKS+K++NL   K+  I
Sbjct: 132 ERRAFMNLKSLKRLNLKGNKIATI 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,784
Number of Sequences: 336
Number of extensions: 2976
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)