SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30041
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    25   0.49 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.9  

>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 526 VKHYIIEIMLINKNSLNYTFYFYK*IHTR 612
           VKH+   + L NKN++++ +Y+Y   + R
Sbjct: 46  VKHFH-PLALSNKNAIDFNYYYYAATYAR 73


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 391 PFSVWKGSKERHFKVLKLSPERS 459
           PF++  G + + + V++ SP++S
Sbjct: 7   PFAMTLGQQNKMYNVIQHSPQQS 29


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 534 VFHAIHLLFYYGIPYNYCTM 475
           +   +HLLF   I Y YC +
Sbjct: 273 IIFTMHLLFLLCIYYFYCAL 292


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,169
Number of Sequences: 336
Number of extensions: 4184
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).