SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30026
         (796 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.30 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.6  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    24   1.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.1  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   4.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   4.9  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   8.6  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 426 FLPKTSPTIPQKNALATPPLIKAMLINPA 340
           FL    P +PQ   L  PP+    +INP+
Sbjct: 169 FLCNNYPPLPQVPPLPLPPIFPPTMINPS 197


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 174 LRWHLVRLPCLCEWGF 127
           LRWH    P +C W F
Sbjct: 336 LRWHTGERPFVCNWLF 351


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 210 LLCPARFRNPPSLRWH 163
           LLCPA+    PS RW+
Sbjct: 252 LLCPAQGFPSPSFRWY 267



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 146 HGNLTRCHRRDGGLRNRAGQSRV 214
           H N+T  H  DGGL      S+V
Sbjct: 475 HLNITAIHTNDGGLYRCVASSKV 497


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 261 KKGTRTLLKHSG*SGRTLLCPARFRN 184
           K+GT T+ +HS  S  T+     FRN
Sbjct: 534 KQGTNTITRHSTESSLTIPFERTFRN 559


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 134 GASDFRGDFLNHYFGLAKKKKYFFTI 57
           G  DFR DFL  Y+   +++   F I
Sbjct: 205 GYEDFRRDFLRTYWSAKRQRDIRFQI 230


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 449 ATSSLGCSSCRRHRPL 402
           +T S GC +C  H PL
Sbjct: 30  STISQGCKACGYHSPL 45


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 426 FLPKTSPTIPQKNALATPPLIKAMLINPA 340
           FL      +PQ   L  PP+    +INP+
Sbjct: 169 FLCNNYLPLPQVPPLPLPPIFAPTMINPS 197


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 317 ELQLTTYQAGLINMAFMSGGVAS 385
           EL+      GLI  A +SGG+AS
Sbjct: 165 ELKSALNAKGLILSAAVSGGIAS 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,927
Number of Sequences: 336
Number of extensions: 4804
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).