Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0251.Seq
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   3.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   6.5  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
 Frame = +3

Query: 321 VTLTAPIHGVDKILCIGLNYKDHCQEQNLTPP-----PVPMVF 434
           + L+ P+     I   G+ Y+D C      PP     P P++F
Sbjct: 166 INLSVPVLLSGLIAMCGMYYRDECSFAESIPPYLFFVPPPLMF 208


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
 Frame = +3

Query: 321 VTLTAPIHGVDKILCIGLNYKDHCQEQNLTPP-----PVPMVF 434
           + L+ P+     I   G+ Y+D C      PP     P P++F
Sbjct: 399 INLSVPVLLSGLIAMCGMYYRDECSFAESIPPYLFFVPPPLMF 441


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
 Frame = +3

Query: 321 VTLTAPIHGVDKILCIGLNYKDHCQEQNLTPP-----PVPMVF 434
           + L+ P+     I   G+ Y+D C      PP     P P++F
Sbjct: 399 INLSVPVLLSGLIAMCGMYYRDECSFAESIPPYLFFVPPPLMF 441


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 396 EQNLTPPPVPMVFSKFSSTI 455
           E N  PPP P     F+ T+
Sbjct: 727 ENNAPPPPPPPRVESFAETV 746



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 154 SPKNIRVGYLEGDDIVDINKADSSLPTTL 240
           S K  R  Y   DD+++  K   +  TTL
Sbjct: 235 SKKKTRYYYRSVDDVIEKGKRPGAFRTTL 263


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,166
Number of Sequences: 336
Number of extensions: 3037
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)