Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0230.Seq
         (459 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   1.8  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   3.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.3  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = -1

Query: 219 PGPGMRCTPGAVGLGAPLRRREAGLRRHSHRP 124
           P P +R    A       R   AG   H HRP
Sbjct: 277 PAPAVRAAGDAAAARGAARADGAGGPLHDHRP 308


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 371 GLVPEGNPSCPFSGTLPVFPKVTRE 297
           G  P        SG LPV P +TRE
Sbjct: 348 GRTPPNPLDAVTSGLLPVRPPLTRE 372


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -1

Query: 111 LVRFQHGFYLLLNFCCS--IFRFH 46
           LV   + +Y+ L FCC+  IF  H
Sbjct: 255 LVCIYYFYYMHLLFCCAFIIFTMH 278


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 399 KFAKGQQVWGGSG 437
           K  +GQ VW G G
Sbjct: 459 KLVRGQDVWLGKG 471


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,563
Number of Sequences: 336
Number of extensions: 2226
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)