Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0164
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.2  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   6.2  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   8.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 377 DVPGLRRVRESGH 415
           DVPGLR+V  +G+
Sbjct: 67  DVPGLRQVLANGN 79


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
          protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 8  LCLRXRSHHLAPFIPTSXXIF 70
          LC+R R H   P+ P    I+
Sbjct: 17 LCVRKRPHSPEPYPPRCPPIY 37


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 218 LVKSSAWLEFTKQFRV 171
           +V+   WL FTKQ  +
Sbjct: 137 IVEIGGWLAFTKQLLI 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,162
Number of Sequences: 336
Number of extensions: 1614
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)