Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0079
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   3.1  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    21   7.1  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 191 VRDYFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESNIK 72
           V D  P LC+ LI +   L  D        NL+  + N+K
Sbjct: 41  VEDIDPTLCTHLIYSFVGLGDDSRIKHLEPNLDVNQGNLK 80


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +3

Query: 153  NQIGAKFWEVISDEHGIDATGAYSGDSDLQLERIMSTITKLQGXST 290
            N+I  + W V  D  G     AY GD  +  E I S   K +   T
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKAEYIKT 956


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 440 PDLCNVLSPSYSPPQTVR 387
           P++C +   SY+ P T++
Sbjct: 249 PNVCRICGKSYARPSTLK 266


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 137 LDVDDFPHDCTKNLEPPESNIK*TL 63
           LD DDF   C K   P  + IK T+
Sbjct: 358 LDTDDFRGICGKGPYPIMNAIKQTI 382


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,862
Number of Sequences: 336
Number of extensions: 2159
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)