Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0075
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   6.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   6.0  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 193 PCRTWTSPPGPRRRS 149
           P R W+SPP  R  S
Sbjct: 121 PRREWSSPPDARAAS 135


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 193 PCRTWTSPPGPRRRS 149
           P R W+SPP  R  S
Sbjct: 277 PRREWSSPPDARAAS 291


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 299 PQRTGN*TRRKLSPPASRPCGHARRHC 379
           P+R  +  ++ L+P    P G   R+C
Sbjct: 411 PERFSDENKKNLTPYTYLPFGEGPRNC 437


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 297  DPKGQEIERGASYLRLRPDRVAMQDATAQMAMLQFIS 407
            D   QE+     YL+L P  +      A + ++QF++
Sbjct: 1308 DESTQEVHISKEYLQLEPIGLVFVFFFALILVIQFVA 1344


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 297  DPKGQEIERGASYLRLRPDRVAMQDATAQMAMLQFIS 407
            D   QE+     YL+L P  +      A + ++QF++
Sbjct: 1308 DESTQEVHISKEYLQLEPIGLVFVFFFALILVIQFVA 1344


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,557
Number of Sequences: 336
Number of extensions: 2724
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)